CRAN Package Check Results for Maintainer ‘Jan Lisec <jan.lisec at bam.de>’

Last updated on 2025-03-29 08:53:13 CET.

Package ERROR NOTE OK
CorMID 15
CorrectOverloadedPeaks 2 13
eCerto 4 11
HiResTEC 15
InterpretMSSpectrum 15
IsoCor 15
MetabolomicsBasics 2 13

Package CorMID

Current CRAN status: OK: 15

Package CorrectOverloadedPeaks

Current CRAN status: NOTE: 2, OK: 13

Version: 1.3.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘xcms’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package eCerto

Current CRAN status: ERROR: 4, OK: 11

Version: 0.8.4
Check: tests
Result: ERROR Running ‘testthat.R’ [20s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eCerto) > > # setting this variable will suppress most eCerto message calls > Sys.setenv("GOLEM_CONFIG_ACTIVE"="default") > > ## run all tests similar to Ctrl+Shift+T in RStudio > # testthat::test_check(package = "eCerto", reporter=c("minimal", "location")) > > ## check for the code covered by test functions > # x <- covr::package_coverage(quiet = FALSE, function_exclusions = "page_*") > # covr::zero_coverage(x = x) > # covr::function_coverage(fun = eCerto:::app_server) > # covr::function_coverage(fun = eCerto:::list2rv, code = source("tests/testthat/test-list2rv.R")) > > ## tests with snaps fail upon "RCHECK" while being successful in "test_check" > ## setting R_TESTS avoids this problem > Sys.setenv(R_TESTS="") > > ## run all tests > # testthat::test_dir(path = "./tests/testthat") > testthat::test_dir(path = "./testthat") ✔ | F W S OK | Context ⠏ | 0 | ExcelUpload ⠋ | 1 | ExcelUpload ⠙ | 2 | ExcelUpload ⠸ | 4 | ExcelUpload ✔ | 4 | ExcelUpload [4.8s] ⠏ | 0 | RData_export ⠋ | 1 | RData_export ✔ | 2 | RData_export ⠏ | 0 | Rdata_import ⠋ | 1 | Rdata_import ⠧ | 8 | Rdata_import ⠇ | 9 | Rdata_import ⠋ | 11 | Rdata_import ✔ | 12 | Rdata_import [1.1s] ⠏ | 0 | app_inits ✔ | 3 | app_inits ⠏ | 0 | app_utils ⠙ | 2 | app_utils ⠹ | 3 | app_utils ⠇ | 9 | app_utils ⠙ | 12 | app_utils ✔ | 13 | app_utils [1.3s] ⠏ | 0 | certification ⠋ | 1 | certification ✔ | 2 | certification [3.6s] ⠏ | 0 | fnc_CertValPlot ⠋ | 1 | fnc_CertValPlot ⠸ | 1 3 | fnc_CertValPlot ✔ | 1 3 | fnc_CertValPlot ⠏ | 0 | fnc_assert_col ✔ | 9 | fnc_assert_col ⠏ | 0 | fnc_calc_time_diff ✔ | 6 | fnc_calc_time_diff ⠏ | 0 | fnc_check_fmt_Vdata ✔ | 1 | fnc_check_fmt_Vdata ⠏ | 0 | fnc_digits_DIN1333 ✔ | 1 | fnc_digits_DIN1333 ⠏ | 0 | fnc_flt_Vdata ✔ | 5 | fnc_flt_Vdata ⠏ | 0 | fnc_get_local_file ⠼ | 5 | fnc_get_local_file ✔ | 7 | fnc_get_local_file ⠏ | 0 | fnc_plot_lts_data ⠦ | 1 6 | fnc_plot_lts_data ✔ | 2 7 | fnc_plot_lts_data ⠏ | 0 | fnc_prepFigS1 ✔ | 4 | fnc_prepFigS1 ⠏ | 0 | fnc_prepFigS2 ⠸ | 4 | fnc_prepFigS2 ✔ | 6 | fnc_prepFigS2 ⠏ | 0 | fnc_prepFigS3 ✔ | 1 | fnc_prepFigS3 ⠏ | 0 | fnc_prepFigV2 ⠋ | 1 0 | fnc_prepFigV2 ✔ | 1 0 | fnc_prepFigV2 ⠏ | 0 | fnc_prepFigV3 ⠋ | 1 0 | fnc_prepFigV3 ✔ | 1 0 | fnc_prepFigV3 ⠏ | 0 | fnc_prepTabC0 ✔ | 3 | fnc_prepTabC0 ⠏ | 0 | fnc_prepTabC1 ⠋ | 1 | fnc_prepTabC1 ⠙ | 2 | fnc_prepTabC1 ✔ | 3 | fnc_prepTabC1 ⠏ | 0 | fnc_prepTabC2 ✔ | 4 | fnc_prepTabC2 ⠏ | 0 | fnc_prepTabH1 ✔ | 10 | fnc_prepTabH1 ⠏ | 0 | fnc_read_lts_input ⠋ | 1 | fnc_read_lts_input ✔ | 4 | fnc_read_lts_input ⠏ | 0 | fnc_read_xlsx ⠋ | 1 | fnc_read_xlsx ⠴ | 6 | fnc_read_xlsx ✔ | 10 | fnc_read_xlsx ⠏ | 0 | fnc_read_zenodo ⠋ | 1 | fnc_read_zenodo ✔ | 4 | fnc_read_zenodo ⠏ | 0 | fnc_round_DIN1333 ✔ | 1 | fnc_round_DIN1333 ⠏ | 0 | fnc_steyx ⠴ | 6 | fnc_steyx ✔ | 6 | fnc_steyx ⠏ | 0 | fnc_styleTabC0 ⠋ | 1 | fnc_styleTabC0 ✔ | 5 | fnc_styleTabC0 ⠏ | 0 | fnc_styleTabC1 ⠋ | 1 | fnc_styleTabC1 ✔ | 1 | fnc_styleTabC1 ⠏ | 0 | fnc_styleTabC2 ✔ | 1 | fnc_styleTabC2 ⠏ | 0 | fnc_styleTabH1 ✔ | 5 | fnc_styleTabH1 ⠏ | 0 | fnc_styleTabH2 ✔ | 3 | fnc_styleTabH2 ⠏ | 0 | fnc_styleTabL1 ✔ | 1 | fnc_styleTabL1 ⠏ | 0 | help_the_user_modal ⠙ | 1 1 | help_the_user_modal ✖ | 1 1 1 | help_the_user_modal ──────────────────────────────────────────────────────────────────────────────── Warning ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/eCerto/app/www/rmd/start_gethelp.Rmd': Read-only file system Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") ──────────────────────────────────────────────────────────────────────────────── ⠏ | 0 | homogeneity ⠹ | 3 | homogeneity ⠸ | 4 | homogeneity ⠼ | 5 | homogeneity ✔ | 5 | homogeneity [1.9s] ⠏ | 0 | list2rv ⠙ | 2 | list2rv ⠹ | 3 | list2rv ⠼ | 5 | list2rv ✔ | 5 | list2rv ⠏ | 0 | materialtabelle ⠋ | 1 | materialtabelle ✔ | 5 | materialtabelle ⠏ | 0 | mod_xlsx_range_select ⠋ | 1 | mod_xlsx_range_select ⠸ | 4 | mod_xlsx_range_select ⠴ | 6 | mod_xlsx_range_select ⠦ | 7 | mod_xlsx_range_select ⠧ | 8 | mod_xlsx_range_select ✔ | 8 | mod_xlsx_range_select [2.8s] ⠏ | 0 | page_start ✔ | 1 0 | page_start ⠏ | 0 | reactiveClass ⠹ | 3 | reactiveClass ⠧ | 8 | reactiveClass ✔ | 8 | reactiveClass ⠏ | 0 | run_app ✔ | 1 0 | run_app ⠏ | 0 | stability ⠋ | 1 | stability ✔ | 1 | stability [2.9s] ⠏ | 0 | statistic_helper ⠦ | 7 | statistic_helper ⠇ | 9 | statistic_helper ⠹ | 13 | statistic_helper ✔ | 27 | statistic_helper ⠏ | 0 | validation ⠴ | 6 | validation ⠙ | 1 11 | validation ✔ | 1 11 | validation ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 25.9 s ── Skipped tests (8) ─────────────────────────────────────────────────────────── • On CRAN (8): 'test-fnc_CertValPlot.R:15:3', 'test-fnc_plot_lts_data.R:18:5', 'test-fnc_plot_lts_data.R:69:5', 'test-fnc_prepFigV2.R:7:5', 'test-fnc_prepFigV3.R:8:5', 'test-page_start.R:6:5', 'test-run_app.R:5:5', 'test-validation.R:37:5' ── Failed tests ──────────────────────────────────────────────────────────────── Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 8 | PASS 218 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.8.4
Check: tests
Result: ERROR Running ‘testthat.R’ [13s/18s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eCerto) > > # setting this variable will suppress most eCerto message calls > Sys.setenv("GOLEM_CONFIG_ACTIVE"="default") > > ## run all tests similar to Ctrl+Shift+T in RStudio > # testthat::test_check(package = "eCerto", reporter=c("minimal", "location")) > > ## check for the code covered by test functions > # x <- covr::package_coverage(quiet = FALSE, function_exclusions = "page_*") > # covr::zero_coverage(x = x) > # covr::function_coverage(fun = eCerto:::app_server) > # covr::function_coverage(fun = eCerto:::list2rv, code = source("tests/testthat/test-list2rv.R")) > > ## tests with snaps fail upon "RCHECK" while being successful in "test_check" > ## setting R_TESTS avoids this problem > Sys.setenv(R_TESTS="") > > ## run all tests > # testthat::test_dir(path = "./tests/testthat") > testthat::test_dir(path = "./testthat") ✔ | F W S OK | Context ⠏ | 0 | ExcelUpload ⠋ | 1 | ExcelUpload ⠙ | 2 | ExcelUpload ⠸ | 4 | ExcelUpload ✔ | 4 | ExcelUpload [2.8s] ⠏ | 0 | RData_export ⠋ | 1 | RData_export ✔ | 2 | RData_export ⠏ | 0 | Rdata_import ⠋ | 1 | Rdata_import ⠧ | 8 | Rdata_import ⠏ | 10 | Rdata_import ⠋ | 11 | Rdata_import ✔ | 12 | Rdata_import ⠏ | 0 | app_inits ✔ | 3 | app_inits ⠏ | 0 | app_utils ⠙ | 2 | app_utils ⠼ | 5 | app_utils ⠹ | 13 | app_utils ✔ | 13 | app_utils ⠏ | 0 | certification ⠋ | 1 | certification ✔ | 2 | certification [2.3s] ⠏ | 0 | fnc_CertValPlot ⠸ | 1 3 | fnc_CertValPlot ✔ | 1 3 | fnc_CertValPlot ⠏ | 0 | fnc_assert_col ✔ | 9 | fnc_assert_col ⠏ | 0 | fnc_calc_time_diff ✔ | 6 | fnc_calc_time_diff ⠏ | 0 | fnc_check_fmt_Vdata ✔ | 1 | fnc_check_fmt_Vdata ⠏ | 0 | fnc_digits_DIN1333 ✔ | 1 | fnc_digits_DIN1333 ⠏ | 0 | fnc_flt_Vdata ✔ | 5 | fnc_flt_Vdata ⠏ | 0 | fnc_get_local_file ✔ | 7 | fnc_get_local_file ⠏ | 0 | fnc_plot_lts_data ⠴ | 1 5 | fnc_plot_lts_data ✔ | 2 7 | fnc_plot_lts_data ⠏ | 0 | fnc_prepFigS1 ✔ | 4 | fnc_prepFigS1 ⠏ | 0 | fnc_prepFigS2 ✔ | 6 | fnc_prepFigS2 ⠏ | 0 | fnc_prepFigS3 ✔ | 1 | fnc_prepFigS3 ⠏ | 0 | fnc_prepFigV2 ⠋ | 1 0 | fnc_prepFigV2 ✔ | 1 0 | fnc_prepFigV2 ⠏ | 0 | fnc_prepFigV3 ✔ | 1 0 | fnc_prepFigV3 ⠏ | 0 | fnc_prepTabC0 ✔ | 3 | fnc_prepTabC0 ⠏ | 0 | fnc_prepTabC1 ⠙ | 2 | fnc_prepTabC1 ✔ | 3 | fnc_prepTabC1 ⠏ | 0 | fnc_prepTabC2 ✔ | 4 | fnc_prepTabC2 ⠏ | 0 | fnc_prepTabH1 ✔ | 10 | fnc_prepTabH1 ⠏ | 0 | fnc_read_lts_input ✔ | 4 | fnc_read_lts_input ⠏ | 0 | fnc_read_xlsx ⠧ | 8 | fnc_read_xlsx ✔ | 10 | fnc_read_xlsx ⠏ | 0 | fnc_read_zenodo ⠋ | 1 | fnc_read_zenodo ✔ | 4 | fnc_read_zenodo ⠏ | 0 | fnc_round_DIN1333 ✔ | 1 | fnc_round_DIN1333 ⠏ | 0 | fnc_steyx ✔ | 6 | fnc_steyx ⠏ | 0 | fnc_styleTabC0 ⠋ | 1 | fnc_styleTabC0 ✔ | 5 | fnc_styleTabC0 ⠏ | 0 | fnc_styleTabC1 ⠋ | 1 | fnc_styleTabC1 ✔ | 1 | fnc_styleTabC1 ⠏ | 0 | fnc_styleTabC2 ✔ | 1 | fnc_styleTabC2 ⠏ | 0 | fnc_styleTabH1 ✔ | 5 | fnc_styleTabH1 ⠏ | 0 | fnc_styleTabH2 ✔ | 3 | fnc_styleTabH2 ⠏ | 0 | fnc_styleTabL1 ✔ | 1 | fnc_styleTabL1 ⠏ | 0 | help_the_user_modal ✖ | 1 1 1 | help_the_user_modal ──────────────────────────────────────────────────────────────────────────────── Warning ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/eCerto/app/www/rmd/start_gethelp.Rmd': Read-only file system Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") ──────────────────────────────────────────────────────────────────────────────── ⠏ | 0 | homogeneity ⠸ | 4 | homogeneity ⠼ | 5 | homogeneity ✔ | 5 | homogeneity [1.1s] ⠏ | 0 | list2rv ⠹ | 3 | list2rv ✔ | 5 | list2rv ⠏ | 0 | materialtabelle ⠙ | 2 | materialtabelle ✔ | 5 | materialtabelle ⠏ | 0 | mod_xlsx_range_select ⠋ | 1 | mod_xlsx_range_select ⠸ | 4 | mod_xlsx_range_select ⠴ | 6 | mod_xlsx_range_select ⠦ | 7 | mod_xlsx_range_select ⠧ | 8 | mod_xlsx_range_select ✔ | 8 | mod_xlsx_range_select [1.6s] ⠏ | 0 | page_start ✔ | 1 0 | page_start ⠏ | 0 | reactiveClass ⠴ | 6 | reactiveClass ✔ | 8 | reactiveClass ⠏ | 0 | run_app ✔ | 1 0 | run_app ⠏ | 0 | stability ⠋ | 1 | stability ✔ | 1 | stability [1.5s] ⠏ | 0 | statistic_helper ⠙ | 2 | statistic_helper ⠸ | 14 | statistic_helper ✔ | 27 | statistic_helper ⠏ | 0 | validation ⠴ | 6 | validation ✔ | 1 11 | validation ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 15.6 s ── Skipped tests (8) ─────────────────────────────────────────────────────────── • On CRAN (8): 'test-fnc_CertValPlot.R:15:3', 'test-fnc_plot_lts_data.R:18:5', 'test-fnc_plot_lts_data.R:69:5', 'test-fnc_prepFigV2.R:7:5', 'test-fnc_prepFigV3.R:8:5', 'test-page_start.R:6:5', 'test-run_app.R:5:5', 'test-validation.R:37:5' ── Failed tests ──────────────────────────────────────────────────────────────── Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 8 | PASS 218 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.8.4
Check: tests
Result: ERROR Running ‘testthat.R’ [18s/21s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eCerto) > > # setting this variable will suppress most eCerto message calls > Sys.setenv("GOLEM_CONFIG_ACTIVE"="default") > > ## run all tests similar to Ctrl+Shift+T in RStudio > # testthat::test_check(package = "eCerto", reporter=c("minimal", "location")) > > ## check for the code covered by test functions > # x <- covr::package_coverage(quiet = FALSE, function_exclusions = "page_*") > # covr::zero_coverage(x = x) > # covr::function_coverage(fun = eCerto:::app_server) > # covr::function_coverage(fun = eCerto:::list2rv, code = source("tests/testthat/test-list2rv.R")) > > ## tests with snaps fail upon "RCHECK" while being successful in "test_check" > ## setting R_TESTS avoids this problem > Sys.setenv(R_TESTS="") > > ## run all tests > # testthat::test_dir(path = "./tests/testthat") > testthat::test_dir(path = "./testthat") ✔ | F W S OK | Context ⠏ | 0 | ExcelUpload ⠋ | 1 | ExcelUpload ⠸ | 4 | ExcelUpload ✔ | 4 | ExcelUpload [2.8s] ⠏ | 0 | RData_export ⠋ | 1 | RData_export ✔ | 2 | RData_export ⠏ | 0 | Rdata_import ⠋ | 1 | Rdata_import ⠧ | 8 | Rdata_import ⠋ | 11 | Rdata_import ✔ | 12 | Rdata_import ⠏ | 0 | app_inits ✔ | 3 | app_inits ⠏ | 0 | app_utils ⠙ | 2 | app_utils ⠸ | 4 | app_utils ⠙ | 12 | app_utils ✔ | 13 | app_utils ⠏ | 0 | certification ⠋ | 1 | certification ✔ | 2 | certification [2.7s] ⠏ | 0 | fnc_CertValPlot ⠹ | 3 | fnc_CertValPlot ✔ | 1 3 | fnc_CertValPlot ⠏ | 0 | fnc_assert_col ✔ | 9 | fnc_assert_col ⠏ | 0 | fnc_calc_time_diff ✔ | 6 | fnc_calc_time_diff ⠏ | 0 | fnc_check_fmt_Vdata ✔ | 1 | fnc_check_fmt_Vdata ⠏ | 0 | fnc_digits_DIN1333 ✔ | 1 | fnc_digits_DIN1333 ⠏ | 0 | fnc_flt_Vdata ⠼ | 5 | fnc_flt_Vdata ✔ | 5 | fnc_flt_Vdata ⠏ | 0 | fnc_get_local_file ⠼ | 5 | fnc_get_local_file ✔ | 7 | fnc_get_local_file ⠏ | 0 | fnc_plot_lts_data ⠴ | 1 5 | fnc_plot_lts_data ⠇ | 2 7 | fnc_plot_lts_data ✔ | 2 7 | fnc_plot_lts_data ⠏ | 0 | fnc_prepFigS1 ✔ | 4 | fnc_prepFigS1 ⠏ | 0 | fnc_prepFigS2 ⠸ | 4 | fnc_prepFigS2 ✔ | 6 | fnc_prepFigS2 ⠏ | 0 | fnc_prepFigS3 ✔ | 1 | fnc_prepFigS3 ⠏ | 0 | fnc_prepFigV2 ⠋ | 1 0 | fnc_prepFigV2 ✔ | 1 0 | fnc_prepFigV2 ⠏ | 0 | fnc_prepFigV3 ✔ | 1 0 | fnc_prepFigV3 ⠏ | 0 | fnc_prepTabC0 ✔ | 3 | fnc_prepTabC0 ⠏ | 0 | fnc_prepTabC1 ⠋ | 1 | fnc_prepTabC1 ⠹ | 3 | fnc_prepTabC1 ✔ | 3 | fnc_prepTabC1 ⠏ | 0 | fnc_prepTabC2 ✔ | 4 | fnc_prepTabC2 ⠏ | 0 | fnc_prepTabH1 ✔ | 10 | fnc_prepTabH1 ⠏ | 0 | fnc_read_lts_input ⠸ | 4 | fnc_read_lts_input ✔ | 4 | fnc_read_lts_input ⠏ | 0 | fnc_read_xlsx ⠼ | 5 | fnc_read_xlsx ✔ | 10 | fnc_read_xlsx ⠏ | 0 | fnc_read_zenodo ⠋ | 1 | fnc_read_zenodo ✔ | 4 | fnc_read_zenodo ⠏ | 0 | fnc_round_DIN1333 ✔ | 1 | fnc_round_DIN1333 ⠏ | 0 | fnc_steyx ⠴ | 6 | fnc_steyx ✔ | 6 | fnc_steyx ⠏ | 0 | fnc_styleTabC0 ⠋ | 1 | fnc_styleTabC0 ✔ | 5 | fnc_styleTabC0 ⠏ | 0 | fnc_styleTabC1 ⠋ | 1 | fnc_styleTabC1 ✔ | 1 | fnc_styleTabC1 ⠏ | 0 | fnc_styleTabC2 ✔ | 1 | fnc_styleTabC2 ⠏ | 0 | fnc_styleTabH1 ✔ | 5 | fnc_styleTabH1 ⠏ | 0 | fnc_styleTabH2 ✔ | 3 | fnc_styleTabH2 ⠏ | 0 | fnc_styleTabL1 ✔ | 1 | fnc_styleTabL1 ⠏ | 0 | help_the_user_modal ✖ | 1 1 1 | help_the_user_modal ──────────────────────────────────────────────────────────────────────────────── Warning ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/eCerto/app/www/rmd/start_gethelp.Rmd': Read-only file system Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") ──────────────────────────────────────────────────────────────────────────────── ⠏ | 0 | homogeneity ⠸ | 4 | homogeneity ⠼ | 5 | homogeneity ✔ | 5 | homogeneity [1.7s] ⠏ | 0 | list2rv ⠙ | 2 | list2rv ⠸ | 4 | list2rv ✔ | 5 | list2rv ⠏ | 0 | materialtabelle ⠋ | 1 | materialtabelle ✔ | 5 | materialtabelle ⠏ | 0 | mod_xlsx_range_select ⠋ | 1 | mod_xlsx_range_select ⠸ | 4 | mod_xlsx_range_select ⠴ | 6 | mod_xlsx_range_select ⠦ | 7 | mod_xlsx_range_select ⠧ | 8 | mod_xlsx_range_select ✔ | 8 | mod_xlsx_range_select [1.9s] ⠏ | 0 | page_start ✔ | 1 0 | page_start ⠏ | 0 | reactiveClass ⠴ | 6 | reactiveClass ✔ | 8 | reactiveClass ⠏ | 0 | run_app ✔ | 1 0 | run_app ⠏ | 0 | stability ⠋ | 1 | stability ✔ | 1 | stability [2.0s] ⠏ | 0 | statistic_helper ⠇ | 9 | statistic_helper ⠹ | 13 | statistic_helper ✔ | 27 | statistic_helper ⠏ | 0 | validation ⠴ | 6 | validation ⠙ | 1 11 | validation ✔ | 1 11 | validation ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 18.3 s ── Skipped tests (8) ─────────────────────────────────────────────────────────── • On CRAN (8): 'test-fnc_CertValPlot.R:15:3', 'test-fnc_plot_lts_data.R:18:5', 'test-fnc_plot_lts_data.R:69:5', 'test-fnc_prepFigV2.R:7:5', 'test-fnc_prepFigV3.R:8:5', 'test-page_start.R:6:5', 'test-run_app.R:5:5', 'test-validation.R:37:5' ── Failed tests ──────────────────────────────────────────────────────────────── Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 8 | PASS 218 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 0.8.4
Check: tests
Result: ERROR Running ‘testthat.R’ [19s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eCerto) > > # setting this variable will suppress most eCerto message calls > Sys.setenv("GOLEM_CONFIG_ACTIVE"="default") > > ## run all tests similar to Ctrl+Shift+T in RStudio > # testthat::test_check(package = "eCerto", reporter=c("minimal", "location")) > > ## check for the code covered by test functions > # x <- covr::package_coverage(quiet = FALSE, function_exclusions = "page_*") > # covr::zero_coverage(x = x) > # covr::function_coverage(fun = eCerto:::app_server) > # covr::function_coverage(fun = eCerto:::list2rv, code = source("tests/testthat/test-list2rv.R")) > > ## tests with snaps fail upon "RCHECK" while being successful in "test_check" > ## setting R_TESTS avoids this problem > Sys.setenv(R_TESTS="") > > ## run all tests > # testthat::test_dir(path = "./tests/testthat") > testthat::test_dir(path = "./testthat") ✔ | F W S OK | Context ⠏ | 0 | ExcelUpload ⠋ | 1 | ExcelUpload ⠙ | 2 | ExcelUpload ⠸ | 4 | ExcelUpload ✔ | 4 | ExcelUpload [3.5s] ⠏ | 0 | RData_export ⠋ | 1 | RData_export ✔ | 2 | RData_export ⠏ | 0 | Rdata_import ⠋ | 1 | Rdata_import ⠧ | 8 | Rdata_import ⠏ | 10 | Rdata_import ⠋ | 11 | Rdata_import ✔ | 12 | Rdata_import [1.3s] ⠏ | 0 | app_inits ✔ | 3 | app_inits ⠏ | 0 | app_utils ⠙ | 2 | app_utils ⠸ | 4 | app_utils ⠋ | 11 | app_utils ✔ | 13 | app_utils [1.2s] ⠏ | 0 | certification ⠋ | 1 | certification ✔ | 2 | certification [3.8s] ⠏ | 0 | fnc_CertValPlot ⠙ | 2 | fnc_CertValPlot ⠸ | 1 3 | fnc_CertValPlot ✔ | 1 3 | fnc_CertValPlot ⠏ | 0 | fnc_assert_col ✔ | 9 | fnc_assert_col ⠏ | 0 | fnc_calc_time_diff ✔ | 6 | fnc_calc_time_diff ⠏ | 0 | fnc_check_fmt_Vdata ✔ | 1 | fnc_check_fmt_Vdata ⠏ | 0 | fnc_digits_DIN1333 ✔ | 1 | fnc_digits_DIN1333 ⠏ | 0 | fnc_flt_Vdata ⠋ | 1 | fnc_flt_Vdata ✔ | 5 | fnc_flt_Vdata ⠏ | 0 | fnc_get_local_file ⠼ | 5 | fnc_get_local_file ✔ | 7 | fnc_get_local_file ⠏ | 0 | fnc_plot_lts_data ⠸ | 4 | fnc_plot_lts_data ⠧ | 1 7 | fnc_plot_lts_data ⠇ | 2 7 | fnc_plot_lts_data ✔ | 2 7 | fnc_plot_lts_data ⠏ | 0 | fnc_prepFigS1 ✔ | 4 | fnc_prepFigS1 ⠏ | 0 | fnc_prepFigS2 ⠋ | 1 | fnc_prepFigS2 ⠸ | 4 | fnc_prepFigS2 ✔ | 6 | fnc_prepFigS2 ⠏ | 0 | fnc_prepFigS3 ✔ | 1 | fnc_prepFigS3 ⠏ | 0 | fnc_prepFigV2 ⠋ | 1 0 | fnc_prepFigV2 ✔ | 1 0 | fnc_prepFigV2 ⠏ | 0 | fnc_prepFigV3 ⠋ | 1 0 | fnc_prepFigV3 ✔ | 1 0 | fnc_prepFigV3 ⠏ | 0 | fnc_prepTabC0 ✔ | 3 | fnc_prepTabC0 ⠏ | 0 | fnc_prepTabC1 ⠋ | 1 | fnc_prepTabC1 ⠙ | 2 | fnc_prepTabC1 ✔ | 3 | fnc_prepTabC1 ⠏ | 0 | fnc_prepTabC2 ✔ | 4 | fnc_prepTabC2 ⠏ | 0 | fnc_prepTabH1 ⠼ | 5 | fnc_prepTabH1 ✔ | 10 | fnc_prepTabH1 ⠏ | 0 | fnc_read_lts_input ⠋ | 1 | fnc_read_lts_input ⠸ | 4 | fnc_read_lts_input ✔ | 4 | fnc_read_lts_input ⠏ | 0 | fnc_read_xlsx ⠋ | 1 | fnc_read_xlsx ⠼ | 5 | fnc_read_xlsx ✔ | 10 | fnc_read_xlsx ⠏ | 0 | fnc_read_zenodo ⠋ | 1 | fnc_read_zenodo ✔ | 4 | fnc_read_zenodo [1.3s] ⠏ | 0 | fnc_round_DIN1333 ✔ | 1 | fnc_round_DIN1333 ⠏ | 0 | fnc_steyx ✔ | 6 | fnc_steyx ⠏ | 0 | fnc_styleTabC0 ⠋ | 1 | fnc_styleTabC0 ✔ | 5 | fnc_styleTabC0 ⠏ | 0 | fnc_styleTabC1 ⠋ | 1 | fnc_styleTabC1 ✔ | 1 | fnc_styleTabC1 ⠏ | 0 | fnc_styleTabC2 ✔ | 1 | fnc_styleTabC2 ⠏ | 0 | fnc_styleTabH1 ⠹ | 3 | fnc_styleTabH1 ✔ | 5 | fnc_styleTabH1 ⠏ | 0 | fnc_styleTabH2 ✔ | 3 | fnc_styleTabH2 ⠏ | 0 | fnc_styleTabL1 ✔ | 1 | fnc_styleTabL1 ⠏ | 0 | help_the_user_modal ⠹ | 1 1 1 | help_the_user_modal ✖ | 1 1 1 | help_the_user_modal ──────────────────────────────────────────────────────────────────────────────── Warning ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/eCerto/app/www/rmd/start_gethelp.Rmd': Read-only file system Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") ──────────────────────────────────────────────────────────────────────────────── ⠏ | 0 | homogeneity ⠸ | 4 | homogeneity ⠼ | 5 | homogeneity ✔ | 5 | homogeneity [1.8s] ⠏ | 0 | list2rv ⠙ | 2 | list2rv ⠹ | 3 | list2rv ⠸ | 4 | list2rv ⠼ | 5 | list2rv ✔ | 5 | list2rv ⠏ | 0 | materialtabelle ⠋ | 1 | materialtabelle ⠼ | 5 | materialtabelle ✔ | 5 | materialtabelle ⠏ | 0 | mod_xlsx_range_select ⠋ | 1 | mod_xlsx_range_select ⠸ | 4 | mod_xlsx_range_select ⠴ | 6 | mod_xlsx_range_select ⠦ | 7 | mod_xlsx_range_select ⠧ | 8 | mod_xlsx_range_select ✔ | 8 | mod_xlsx_range_select [3.1s] ⠏ | 0 | page_start ✔ | 1 0 | page_start ⠏ | 0 | reactiveClass ⠹ | 3 | reactiveClass ⠧ | 8 | reactiveClass ✔ | 8 | reactiveClass ⠏ | 0 | run_app ✔ | 1 0 | run_app ⠏ | 0 | stability ⠋ | 1 | stability ✔ | 1 | stability [3.1s] ⠏ | 0 | statistic_helper ⠋ | 1 | statistic_helper ⠇ | 9 | statistic_helper ⠹ | 23 | statistic_helper ✔ | 27 | statistic_helper ⠏ | 0 | validation ⠸ | 4 | validation ⠴ | 6 | validation ⠋ | 11 | validation ✔ | 1 11 | validation ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 26.7 s ── Skipped tests (8) ─────────────────────────────────────────────────────────── • On CRAN (8): 'test-fnc_CertValPlot.R:15:3', 'test-fnc_plot_lts_data.R:18:5', 'test-fnc_plot_lts_data.R:69:5', 'test-fnc_prepFigV2.R:7:5', 'test-fnc_prepFigV3.R:8:5', 'test-page_start.R:6:5', 'test-run_app.R:5:5', 'test-validation.R:37:5' ── Failed tests ──────────────────────────────────────────────────────────────── Error ('test-help_the_user_modal.R:6:5'): 'show_help' renders Rmd files correctly Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. ├─base::suppressMessages(...) at test-help_the_user_modal.R:4:3 2. │ └─base::withCallingHandlers(...) 3. └─eCerto:::show_help(filename = fn, show_modal = FALSE) at test-help_the_user_modal.R:6:5 4. ├─shiny::withMathJax(...) 5. │ └─htmltools::tagList(...) 6. │ └─rlang::dots_list(...) 7. ├─shiny::HTML(markdown::markdownToHTML(file = file_in, fragment.only = TRUE)) 8. └─markdown::markdownToHTML(file = file_in, fragment.only = TRUE) 9. └─markdown::mark_html(...) 10. └─markdown::mark(..., format = "html", template = template) 11. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file) 12. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 13. └─base::file(con, "w") [ FAIL 1 | WARN 1 | SKIP 8 | PASS 218 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Package HiResTEC

Current CRAN status: OK: 15

Package InterpretMSSpectrum

Current CRAN status: OK: 15

Additional issues

noSuggests

Package IsoCor

Current CRAN status: OK: 15

Package MetabolomicsBasics

Current CRAN status: NOTE: 2, OK: 13

Additional issues

noSuggests

Version: 1.4.5
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ropls', 'xcms' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64