Last updated on 2025-09-18 09:50:35 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/131s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.525, system: 0.050, elapsed: 2.208 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.919, system: 0.101, elapsed: 11.666 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.013, elapsed: 0.214 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.672, system: 0.192, elapsed: 4.890 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.250 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.004, system: 0.385, elapsed: 19.956 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.522, system: 0.044, elapsed: 2.164 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.956, system: 0.119, elapsed: 14.853 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.014, elapsed: 0.283 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.749, system: 0.194, elapsed: 4.877 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.006, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.130, system: 0.404, elapsed: 23.183 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.724, system: 0.076, elapsed: 2.908 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.302, system: 0.273, elapsed: 14.653 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.017, elapsed: 0.339 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.935, system: 0.283, elapsed: 6.260 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.007, elapsed: 0.264 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.161, system: 0.229, elapsed: 1.078 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.094, system: 0.915, elapsed: 26.471 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.619, system: 0.065, elapsed: 2.615 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.099, system: 0.150, elapsed: 23.347 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.013, elapsed: 0.478 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.849, system: 0.207, elapsed: 9.243 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.270 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.460, system: 0.588, elapsed: 17.048 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.027, system: 1.065, elapsed: 54.260 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.500, system: 0.035, elapsed: 2.290 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.987, system: 0.056, elapsed: 13.201 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.012, elapsed: 0.303 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.569, system: 0.183, elapsed: 5.947 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.003, elapsed: 0.245 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.945, system: 0.310, elapsed: 22.974 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.497, system: 0.029, elapsed: 2.548 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.879, system: 0.055, elapsed: 14.894 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.012, elapsed: 0.363 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.683, system: 0.160, elapsed: 6.340 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.961, system: 0.283, elapsed: 25.337 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.524, system: 0.030, elapsed: 2.553 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.117, system: 0.074, elapsed: 14.753 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.011, elapsed: 0.261 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.635, system: 0.168, elapsed: 5.981 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.012, elapsed: 0.310 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.085, system: 0.256, elapsed: 1.416 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.344, system: 0.582, elapsed: 26.304 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.558, system: 0.051, elapsed: 2.583 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.132, system: 0.176, elapsed: 14.055 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.016, elapsed: 0.293 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.738, system: 0.232, elapsed: 8.298 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.427 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.164, system: 0.465, elapsed: 26.626 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.597, system: 0.976, elapsed: 53.570 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64