Last updated on 2025-10-30 08:51:56 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.701, system: 0.073, elapsed: 2.611 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.592, system: 0.223, elapsed: 14.670 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.018, elapsed: 0.298 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.811, system: 0.192, elapsed: 5.669 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.004, elapsed: 0.239 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.039, system: 0.536, elapsed: 24.333 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.574, system: 0.030, elapsed: 2.060 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.481, system: 0.099, elapsed: 14.747 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.013, elapsed: 0.354 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.936, system: 0.183, elapsed: 6.248 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.005, elapsed: 0.294 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.918, system: 0.350, elapsed: 24.535 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.738, system: 0.049, elapsed: 2.674 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.876, system: 0.367, elapsed: 15.707 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.020, elapsed: 0.286 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.309, system: 0.345, elapsed: 6.530 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.013, elapsed: 0.257 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.297, system: 0.266, elapsed: 1.262 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.257, system: 1.102, elapsed: 27.863 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.771, system: 0.087, elapsed: 2.262 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.636, system: 0.134, elapsed: 13.065 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.013, elapsed: 0.220 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.942, system: 0.197, elapsed: 5.599 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.286 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.892, system: 0.511, elapsed: 16.603 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.286, system: 0.989, elapsed: 38.996 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/123s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.791, system: 0.091, elapsed: 2.930 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.733, system: 0.292, elapsed: 14.468 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.016, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.915, system: 0.287, elapsed: 6.054 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.011, elapsed: 0.220 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.374, system: 0.732, elapsed: 24.832 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.839, system: 0.088, elapsed: 2.181 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.376, system: 0.234, elapsed: 10.517 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.017, elapsed: 0.311 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.117, system: 0.300, elapsed: 5.949 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.011, elapsed: 0.252 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.265, system: 0.703, elapsed: 19.951 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.871, system: 0.105, elapsed: 2.878 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.871, system: 0.424, elapsed: 14.649 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.012, elapsed: 0.357 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.835, system: 0.200, elapsed: 6.210 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.016, elapsed: 0.279 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.131, system: 0.262, elapsed: 1.028 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.729, system: 1.060, elapsed: 26.512 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.035, elapsed: 2.188 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.516, system: 0.123, elapsed: 13.528 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.011, elapsed: 0.362 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.698, system: 0.168, elapsed: 8.760 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.004, elapsed: 0.474 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.806, system: 0.498, elapsed: 17.932 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.585, system: 0.867, elapsed: 44.349 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64