Last updated on 2025-04-01 09:55:35 CEST.
| Package | FAIL | ERROR | NOTE | OK |
|---|---|---|---|---|
| AsynchLong | 15 | |||
| baclava | 11 | 4 | ||
| ChangepointTesting | 15 | |||
| CNVreg | 1 | 14 | ||
| CONCUR | 15 | |||
| contTimeCausal | 15 | |||
| DOVE | 4 | 11 | ||
| DTRreg | 1 | 7 | 7 | |
| dtrSurv | 15 | |||
| DynTxRegime | 15 | |||
| FastKM | 15 | |||
| GGMridge | 15 | |||
| highTtest | 7 | 8 | ||
| ICODS | 15 | |||
| iDOVE | 15 | |||
| JMdesign | 15 | |||
| modelObj | 15 | |||
| OTRselect | 15 | |||
| POINT | 15 | |||
| POSTm | 15 | |||
| ramsvm | 15 | |||
| roboBayes | 4 | 11 | ||
| subdetect | 12 | 3 | ||
| SurvLong | 8 | 7 | ||
| tLagInterim | 15 | |||
| tLagPropOdds | 15 | |||
| VEwaning | 15 | |||
| VEwaningVariant | 4 | 11 |
Current CRAN status: OK: 15
Current CRAN status: NOTE: 11, OK: 4
Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘aloocv.R’ ‘cohortODX.R’ ‘computeEndpoints.R’ ‘fit_baclava.R’
‘predictODX.R’ ‘s3_methods.R’ ‘utilities.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 1.0
Check: installed package size
Result: NOTE
installed size is 10.4Mb
sub-directories of 1Mb or more:
libs 10.1Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 15
Current CRAN status: ERROR: 1, OK: 14
Version: 1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CNVReg_vig.Rmd’ using rmarkdown
Quitting from CNVReg_vig.Rmd:27-33 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'kableExtra' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called 'systemfonts'
---
Backtrace:
▆
1. └─base::library("kableExtra")
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CNVReg_vig.Rmd' failed with diagnostics:
package or namespace load failed for 'kableExtra' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called 'systemfonts'
--- failed re-building ‘CNVReg_vig.Rmd’
SUMMARY: processing the following file failed:
‘CNVReg_vig.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: NOTE: 4, OK: 11
Version: 1.10
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 4.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: FAIL: 1, NOTE: 7, OK: 7
Version: 2.2
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘Ahat.R’ ‘DTRreg.R’ ‘DWsurv.R’ ‘dtrProcedure.R’ ‘gest.R’
‘inputProcessing.R’ ‘interactive.R’ ‘treatmentClasses.R’ ‘utils.R’
‘varest.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 2.2
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
9967 9968 9969 9970 9971 9972
7.95236211 1.97235773 5.22925590 9.68159010 3.25209858 2.85175040
9973 9974 9975 9976 9977 9978
8.31368542 3.88197610 7.42569680 2.59384635 4.47277139 9.86129969
9979 9980 9981 9982 9983 9984
8.49604528 8.36992816 3.03599149 5.45701280 7.70514210 4.43478102
9985 9986 9987 9988 9989 9990
2.48714436 6.18481883 5.31846463 2.99238585 3.06021141 3.06111803
9991 9992 9993 9994 9995 9996
8.55795111 5.44103796 4.12226654 5.42525390 6.12124342 8.30135812
9997 9998 9999 10000
6.78105063 6.96352958 8.11084068 6.25999071
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 3.75 0.14 3.89 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: NOTE: 15
Version: 1.1
Check: Rd files
Result: NOTE
checkRd: (-1) KITdesign.Rd:36: Lost braces; missing escapes or markup?
36 | \item{trait}{One of {'c','d','s',NULL} indicating the type
| ^
checkRd: (-1) KITkernel.Rd:51: Lost braces; missing escapes or markup?
51 | \item{trait}{One of {'c','d','s',NULL} indicating the type
| ^
checkRd: (-1) geno.Rd:19: Lost braces; missing escapes or markup?
19 | Must be one of {'ibs', 'linear', 'quadratic'}.
| ^
checkRd: (-1) geno.Rd:31: Lost braces; missing escapes or markup?
31 | {'add', 'dom', 'rec'} indicating additive,
| ^
checkRd: (-1) nongeno.Rd:14: Lost braces; missing escapes or markup?
14 | Must be one of {'interactive', 'linear', 'quadratic'}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘coxKM’
Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 15
Current CRAN status: NOTE: 7, OK: 8
Version: 1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘colorfulVennPlot’
Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: NOTE: 4, OK: 11
Version: 1.2
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
libs 6.8Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 12, OK: 3
Version: 1.2
Check: Rd files
Result: NOTE
checkRd: (-1) subdetect-package.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) subdetect-package.Rd:12: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 8, OK: 7
Version: 1.4
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘scoreFull.R’ ‘scoreHalf.R’ ‘scoreLVCF.R’ ‘scoreNVCF.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: NOTE: 4, OK: 11
Version: 1.4
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 4.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64