Last updated on 2025-10-18 09:50:36 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/121s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.491, system: 0.050, elapsed: 1.972 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.417, system: 0.264, elapsed: 14.447 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.020, elapsed: 0.347 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.923, system: 0.280, elapsed: 5.481 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.005, elapsed: 0.176 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.734, system: 0.642, elapsed: 23.191 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.610, system: 0.072, elapsed: 2.111 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.208, system: 0.247, elapsed: 14.380 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.016, elapsed: 0.335 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.914, system: 0.256, elapsed: 6.128 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.006, elapsed: 0.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.612, system: 0.627, elapsed: 23.973 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.673, system: 0.068, elapsed: 2.679 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.129, system: 0.276, elapsed: 11.255 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.014, elapsed: 0.219 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.823, system: 0.285, elapsed: 5.268 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.011, elapsed: 0.260 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.217, system: 0.253, elapsed: 1.253 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.804, system: 0.939, elapsed: 21.778 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.777, system: 0.105, elapsed: 2.797 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.190, system: 0.244, elapsed: 14.346 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.011, elapsed: 0.280 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.783, system: 0.187, elapsed: 8.991 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.004, elapsed: 0.511 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.345, system: 0.484, elapsed: 17.132 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.104, system: 1.072, elapsed: 45.338 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.498, system: 0.047, elapsed: 2.016 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.790, system: 0.091, elapsed: 9.633 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.014, elapsed: 0.194 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.413, system: 0.181, elapsed: 3.761 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.005, elapsed: 0.188 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.568, system: 0.360, elapsed: 16.396 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.705, system: 0.074, elapsed: 2.297 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.153, system: 0.254, elapsed: 13.606 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.016, elapsed: 0.255 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.821, system: 0.270, elapsed: 6.014 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.008, elapsed: 0.302 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.585, system: 0.672, elapsed: 23.247 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.738, system: 0.076, elapsed: 2.451 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.105, system: 0.263, elapsed: 11.264 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.014, elapsed: 0.226 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.717, system: 0.276, elapsed: 4.959 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.018, elapsed: 0.265 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.110, system: 0.277, elapsed: 1.022 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.645, system: 0.966, elapsed: 21.124 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.722, system: 0.089, elapsed: 2.263 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.944, system: 0.274, elapsed: 10.688 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.016, elapsed: 0.229 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.694, system: 0.238, elapsed: 6.194 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.006, elapsed: 0.273 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.039, system: 0.491, elapsed: 19.366 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.381, system: 1.156, elapsed: 40.209 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64