Last updated on 2025-11-07 09:51:05 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/135s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.597, system: 0.057, elapsed: 2.494 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.463, system: 0.139, elapsed: 11.369 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.016, elapsed: 0.275 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.934, system: 0.247, elapsed: 5.460 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.010, elapsed: 0.268 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.920, system: 0.496, elapsed: 20.651 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.663, system: 0.078, elapsed: 1.972 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.552, system: 0.232, elapsed: 17.775 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.019, elapsed: 0.327 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.137, system: 0.283, elapsed: 6.846 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.008, elapsed: 0.242 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.260, system: 0.651, elapsed: 27.889 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.831, system: 0.089, elapsed: 2.726 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.702, system: 0.323, elapsed: 14.557 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.018, elapsed: 0.314 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.070, system: 0.277, elapsed: 5.901 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.016, elapsed: 0.266 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.315, system: 0.283, elapsed: 1.415 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.920, system: 1.040, elapsed: 26.051 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.700, system: 0.087, elapsed: 2.163 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.588, system: 0.328, elapsed: 11.844 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.018, elapsed: 0.246 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.260, system: 0.355, elapsed: 5.699 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.008, elapsed: 0.218 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.757, system: 0.537, elapsed: 31.269 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.324, system: 1.385, elapsed: 52.299 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/122s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.662, system: 0.047, elapsed: 2.521 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.477, system: 0.155, elapsed: 13.080 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.017, elapsed: 0.281 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.874, system: 0.260, elapsed: 5.869 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.007, elapsed: 0.279 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.934, system: 0.515, elapsed: 22.825 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.806, system: 0.079, elapsed: 2.925 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.786, system: 0.307, elapsed: 13.713 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.018, elapsed: 0.296 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.942, system: 0.257, elapsed: 5.939 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.169 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.457, system: 0.710, elapsed: 23.897 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.930, system: 0.099, elapsed: 2.689 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.588, system: 0.292, elapsed: 11.988 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.017, elapsed: 0.332 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.982, system: 0.322, elapsed: 5.986 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.026, elapsed: 0.229 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.118, system: 0.271, elapsed: 0.930 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.645, system: 1.076, elapsed: 23.054 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.688, system: 0.071, elapsed: 1.887 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.477, system: 0.247, elapsed: 15.188 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.518 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.753, system: 0.180, elapsed: 7.089 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.005, elapsed: 0.422 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.486, system: 0.485, elapsed: 18.968 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.415, system: 1.031, elapsed: 45.324 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64