Last updated on 2026-03-26 08:50:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.1 | 4.97 | 102.73 | 107.70 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.11.1 | 3.55 | 73.26 | 76.81 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.11.1 | 10.00 | 172.66 | 182.66 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.1 | 10.00 | 167.48 | 177.48 | NOTE | |
| r-devel-macos-arm64 | 0.11.1 | 1.00 | 55.00 | 56.00 | OK | |
| r-devel-windows-x86_64 | 0.11.1 | 9.00 | 173.00 | 182.00 | OK | |
| r-patched-linux-x86_64 | 0.11.1 | 6.19 | 91.83 | 98.02 | NOTE | |
| r-release-linux-x86_64 | 0.11.1 | 4.95 | 92.09 | 97.04 | NOTE | |
| r-release-macos-arm64 | 0.11.1 | OK | ||||
| r-release-macos-x86_64 | 0.11.1 | 3.00 | 112.00 | 115.00 | OK | |
| r-release-windows-x86_64 | 0.11.1 | 8.00 | 187.00 | 195.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.11.1 | 4.00 | 112.00 | 116.00 | OK | |
| r-oldrel-windows-x86_64 | 0.11.1 | 11.00 | 222.00 | 233.00 | OK |
Version: 0.11.1
Check: Rd cross-references
Result: NOTE
Unknown package ‘qs’ in Rd xrefs
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.11.1
Check: tests
Result: ERROR
Running ‘run-all.R’ [16s/29s]
Running ‘testthat.R’ [16s/27s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project39d90635867d0e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d906102df96e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9067afef14b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project39d9067afef14b
version 0.11.1
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project39d9067afef14b
version 0.11.1
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9067f0d36a7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: cache.RData
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project39d9067b195183
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project39d9067b195183
Clearing cache for project: test_project39d90635026958
Objects to clear from memory: xxx
Project name: test_project39d90635026958
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project39d906189d3d73
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d906189d3d73
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project39d90632e170c8
Project name: test_project39d90641de8848
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9061f2977d1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project39d9061c56c68e is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project39d9061c56c68e is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project239d9066a1818e1 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file39d90669e6d6 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project39d9063b216443 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project39d9069d2f76e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project39d906432be78b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project39d90660f56731
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d90660f56731
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d90628a9bce4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d90628a9bce4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9067be270cb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9067be270cb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9062a03ccef
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d90670961b60
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d90670961b60
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9066a1ada9c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9066a1ada9c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9069caaa72
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9069caaa72
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9061e0008ea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9061e0008ea
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project39d9062483db70
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9062483db70
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: config helper.function project.info
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project39d9066a8c618c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project39d906eaa37ba
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d90644dbe052
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39d9062ed1f18c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-load.R:473:3'): pass munge files to run ────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: /tmp/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so - /tmp/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so: cannot enable executable stack as shared object requires: Invalid argument
Backtrace:
▆
1. ├─base::suppressMessages(load.project()) at test-load.R:473:3
2. │ └─base::withCallingHandlers(...)
3. └─ProjectTemplate::load.project()
4. └─ProjectTemplate:::.munge.data(config, my.project.info)
5. └─reticulate::source_python(file.path(dir_name, preprocessing.script))
6. └─reticulate::py_run_file(file, local = FALSE, convert = convert)
7. └─reticulate:::ensure_python_initialized()
8. └─reticulate:::initialize_python()
9. └─base::tryCatch(...)
10. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. └─value[[3L]](cond)
[ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
Error:
! Test failures.
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project3a69c23d2f7e1f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c23db0f13
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c27299b2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3a69c27299b2
version 0.11.1
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project3a69c27299b2
version 0.11.1
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c233522b10
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: cache.RData
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project3a69c23b0db007
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project3a69c23b0db007
Clearing cache for project: test_project3a69c25f01d2b8
Objects to clear from memory: xxx
Project name: test_project3a69c25f01d2b8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project3a69c262d68ac5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c262d68ac5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3a69c244cf52ca
Project name: test_project3a69c249d86244
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c258b16300
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project3a69c21b57f094 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project3a69c21b57f094 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project23a69c24585ed60 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file3a69c267d45086 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project3a69c276c4d6e9 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project3a69c21ae4bcc0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.1 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project3a69c22097e504
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project3a69c232949ce
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c232949ce
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c23ad8f0ea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c23ad8f0ea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c27631fba2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c27631fba2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c24648cba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c26806d588
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c26806d588
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c26a44747f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c26a44747f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c21c7fdd29
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c21c7fdd29
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c22c8be94e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c22c8be94e
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project3a69c254fe13cd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c254fe13cd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: config helper.function project.info
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project3a69c22b0ecd6f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project3a69c279c94ed5
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c2f0d7a6d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a69c26644175c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-load.R:473:3'): pass munge files to run ────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: /tmp/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so - /tmp/check-CRAN-regular-hornik/cache/R/reticulate/uv/python/cpython-3.12.13-linux-x86_64-gnu/lib/libpython3.12.so: cannot enable executable stack as shared object requires: Invalid argument
Backtrace:
▆
1. ├─base::suppressMessages(load.project()) at test-load.R:473:3
2. │ └─base::withCallingHandlers(...)
3. └─ProjectTemplate::load.project()
4. └─ProjectTemplate:::.munge.data(config, my.project.info)
5. └─reticulate::source_python(file.path(dir_name, preprocessing.script))
6. └─reticulate::py_run_file(file, local = FALSE, convert = convert)
7. └─reticulate:::ensure_python_initialized()
8. └─reticulate:::initialize_python()
9. └─base::tryCatch(...)
10. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. └─value[[3L]](cond)
[ FAIL 1 | WARN 214 | SKIP 0 | PASS 870 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc