FAVA: Quantify Compositional Variability Across Relative Abundance Vectors

Implements the statistic FAVA, an Fst-based Assessment of Variability across vectors of relative Abundances, as well as a suite of helper functions which enable the visualization and statistical analysis of relative abundance data. The 'FAVA' R package accompanies the paper, “Quantifying compositional variability in microbial communities with FAVA” by Morrison, Xue, and Rosenberg (2025) <doi:10.1073/pnas.2413211122>.

Version: 1.0.9
Depends: R (≥ 2.10)
Imports: dplyr, ggplot2, rlang, tidyr, stringr
Suggests: patchwork (≥ 1.2.0), rmarkdown, viridis, kableExtra, purrr, ape, gridExtra, phyloseq, testthat (≥ 3.0.0)
Published: 2025-03-27
DOI: 10.32614/CRAN.package.FAVA
Author: Maike Morrison ORCID iD [aut, cre, cph]
Maintainer: Maike Morrison <maike.morrison at gmail.com>
BugReports: https://github.com/MaikeMorrison/FAVA/issues
License: MIT + file LICENSE
URL: https://maikemorrison.github.io/FAVA/, https://maikemorrison.github.io/FAVA/articles/microbiome_tutorial.html
NeedsCompilation: no
Materials: README NEWS
CRAN checks: FAVA results

Documentation:

Reference manual: FAVA.pdf

Downloads:

Package source: FAVA_1.0.9.tar.gz
Windows binaries: r-devel: FAVA_1.0.9.zip, r-release: FAVA_1.0.9.zip, r-oldrel: FAVA_1.0.9.zip
macOS binaries: r-devel (arm64): FAVA_1.0.9.tgz, r-release (arm64): FAVA_1.0.9.tgz, r-oldrel (arm64): FAVA_1.0.9.tgz, r-devel (x86_64): FAVA_1.0.9.tgz, r-release (x86_64): FAVA_1.0.9.tgz, r-oldrel (x86_64): FAVA_1.0.9.tgz
Old sources: FAVA archive

Linking:

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