CRAN Package Check Results for Maintainer Edward Burn <edward.burn at ndorms.ox.ac.uk>

CRAN Package Check Results for Maintainer ‘Edward Burn <edward.burn at ndorms.ox.ac.uk>’

Last updated on 2025-08-01 09:51:29 CEST.

Package	ERROR	NOTE	OK
CodelistGenerator			13
CohortConstructor		3	10
IncidencePrevalence			13
PhenotypeR	2	2	9

Version: 0.5.0
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: doc 5.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package IncidencePrevalence

Current CRAN status: OK: 13

Package PhenotypeR

Current CRAN status: ERROR: 2, NOTE: 2, OK: 9

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from CodelistDiagnostics.Rmd:28-56 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpYxrSnv/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘CodelistDiagnostics.Rmd’ --- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘CohortDiagnostics.Rmd’ --- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from DatabaseDiagnostics.Rmd:26-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DatabaseDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmpj9MTwP/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘DatabaseDiagnostics.Rmd’ --- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘PhenotypeDiagnostics.Rmd’ --- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown --- finished re-building ‘PhenotypeExpectations.Rmd’ --- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from PopulationDiagnostics.Rmd:26-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpeiN2UF/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘PopulationDiagnostics.Rmd’ --- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘ShinyDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘CodelistDiagnostics.Rmd’ ‘DatabaseDiagnostics.Rmd’ ‘PopulationDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 5.2Mb sub-directories of 1Mb or more: doc 4.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from CodelistDiagnostics.Rmd:28-56 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6BUJRO/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘CodelistDiagnostics.Rmd’ --- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘CohortDiagnostics.Rmd’ --- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from DatabaseDiagnostics.Rmd:26-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DatabaseDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpzeSK6c/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘DatabaseDiagnostics.Rmd’ --- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘PhenotypeDiagnostics.Rmd’ --- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown --- finished re-building ‘PhenotypeExpectations.Rmd’ --- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from PopulationDiagnostics.Rmd:26-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmphLcOTY/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘PopulationDiagnostics.Rmd’ --- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘ShinyDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘CodelistDiagnostics.Rmd’ ‘DatabaseDiagnostics.Rmd’ ‘PopulationDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64