Last updated on 2025-07-12 09:49:42 CEST.
| Package | ERROR | OK |
|---|---|---|
| GencoDymo2 | 5 | 8 |
Current CRAN status: ERROR: 5, OK: 8
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(GencoDymo2)
Welcome to GencoDymo2 (v1.0.1)!
Tools for dynamic GENCODE annotation analysis.
>
> test_check("GencoDymo2")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-files.R:3:3'): get_latest_release works for human species ──────
<COULDNT_CONNECT/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(7L, "Failed to connect to ftp.ebi.ac.uk port 443 after 35 ms: Could not connect to server",
TRUE)`: Failed to connect to ftp.ebi.ac.uk port 443 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─GencoDymo2::get_latest_release("human", verbose = FALSE) at test-files.R:3:3
2. │ └─RCurl::getURL(url, ftp.use.epsv = FALSE, dirlistonly = TRUE)
3. │ └─RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
4. └─RCurl (local) `<fn>`(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg38’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg38’
Package required and available but unsuitable version: ‘GenomicRanges’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg38’
Packages required and available but unsuitable versions:
'Biostrings', 'GenomicRanges', 'rtracklayer'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64