// Copyright (c) 2014  GeometryFactory (France).  All rights reserved.
//
// This file is part of CGAL (www.cgal.org)
//
// $URL: https://github.com/CGAL/cgal/blob/v6.0.1/BGL/include/CGAL/boost/graph/alpha_expansion_graphcut.h $
// $Id: include/CGAL/boost/graph/alpha_expansion_graphcut.h 50cfbde3b84 $
// SPDX-License-Identifier: LGPL-3.0-or-later OR LicenseRef-Commercial
//
//
// Author(s)     : Ilker O. Yaz, Simon Giraudot

#ifndef CGAL_BOOST_GRAPH_ALPHA_EXPANSION_GRAPHCUT_H
#define CGAL_BOOST_GRAPH_ALPHA_EXPANSION_GRAPHCUT_H

#include <CGAL/Iterator_range.h>
#include <CGAL/assertions.h>
#include <CGAL/property_map.h>
#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
#include <CGAL/Timer.h>
#endif
#include <CGAL/IO/trace.h>

#include <CGAL/Named_function_parameters.h>
#include <CGAL/boost/graph/named_params_helper.h>

#include <boost/version.hpp>

#include <boost/graph/adjacency_list.hpp>
#include <boost/graph/compressed_sparse_row_graph.hpp>

#if defined(BOOST_MSVC)
#  pragma warning(push)
#  pragma warning(disable:4172) // Address boost_1_67_0\boost\graph\named_function_params.hpp(240): warning C4172: returning address of local variable or temporary
#endif

#include <boost/graph/boykov_kolmogorov_max_flow.hpp>

#if defined(BOOST_MSVC)
#  pragma warning(pop)
#endif

#include <vector>



namespace CGAL
{

/// \cond SKIP_IN_MANUAL
namespace internal
{

struct Alpha_expansion_old_API_wrapper_graph
{
  typedef std::size_t vertex_descriptor;
  typedef std::size_t edge_descriptor;
  typedef boost::directed_tag directed_category;
  typedef boost::disallow_parallel_edge_tag edge_parallel_category;
  typedef boost::edge_list_graph_tag traversal_category;

  typedef boost::counting_iterator<std::size_t> counting_iterator;
  typedef CGAL::Iterator_range<counting_iterator> counting_range;

  typedef CGAL::Identity_property_map<std::size_t> Vertex_index_map;
  typedef CGAL::Pointer_property_map<std::size_t>::type Vertex_label_map;

  struct Vertex_label_cost_map
  {
    typedef std::size_t key_type;
    typedef std::vector<double> value_type;
    typedef value_type reference;
    typedef boost::readable_property_map_tag category;

    const std::vector<std::vector<double> >* cost_matrix;

    Vertex_label_cost_map (const std::vector<std::vector<double> >* cost_matrix)
      : cost_matrix (cost_matrix)
    { }

    friend value_type get (const Vertex_label_cost_map& pmap, key_type idx)
    {
      std::vector<double> out;
      out.reserve (pmap.cost_matrix->size());
      for (std::size_t i = 0; i < pmap.cost_matrix->size(); ++ i)
        out.push_back ((*pmap.cost_matrix)[i][idx]);
      return out;
    }
  };

  typedef CGAL::Pointer_property_map<double>::const_type Edge_cost_map;

  const std::vector<std::pair<std::size_t, std::size_t> >& edges;
  const std::vector<double>& edge_costs;
  const std::vector<std::vector<double> >& cost_matrix;
  std::vector<std::size_t>& labels;

  Alpha_expansion_old_API_wrapper_graph (const std::vector<std::pair<std::size_t, std::size_t> >& edges,
                                         const std::vector<double>& edge_costs,
                                         const std::vector<std::vector<double> >& cost_matrix,
                                         std::vector<std::size_t>& labels)
    : edges (edges), edge_costs (edge_costs), cost_matrix (cost_matrix), labels (labels)
  { }

  friend counting_range vertices (const Alpha_expansion_old_API_wrapper_graph& graph)
  {
    return CGAL::make_range (boost::counting_iterator<std::size_t>(0),
                             boost::counting_iterator<std::size_t>(graph.labels.size()));
  }

  friend std::size_t num_vertices (const Alpha_expansion_old_API_wrapper_graph& graph) { return graph.labels.size(); }

  friend counting_range edges (const Alpha_expansion_old_API_wrapper_graph& graph)
  {
    return CGAL::make_range (boost::counting_iterator<std::size_t>(0),
                             boost::counting_iterator<std::size_t>(graph.edges.size()));
  }

  friend vertex_descriptor source (edge_descriptor ed, const Alpha_expansion_old_API_wrapper_graph& graph)
  { return graph.edges[ed].first; }
  friend vertex_descriptor target (edge_descriptor ed, const Alpha_expansion_old_API_wrapper_graph& graph)
  { return graph.edges[ed].second; }

  Vertex_index_map vertex_index_map() const { return Vertex_index_map(); }
  Vertex_label_map vertex_label_map() { return CGAL::make_property_map(labels); }
  Vertex_label_cost_map vertex_label_cost_map() const
  { return Vertex_label_cost_map(&cost_matrix); }
  Edge_cost_map edge_cost_map() const { return CGAL::make_property_map(edge_costs); }
};

////////////////////////////////////////////////////////////////////////////////////////
//   Comments about performance:
//
// 1) With BGL:
//     * Using adjacency_list:
//     ** Without pre-allocating vertex-list
//       | OutEdgeList | VertexList | Performance |
//       |    listS    |   listS    |     25.2    |
//       |    vecS     |   listS    |     22.7    |
//       |    listS    |   vecS     |     30.7    |
//       |    vecS     |   vecS     |     26.1    |
//
//     ** With pre-allocating vertex-list with max-node size
//        (Note: exact number of vertices are not certain at the beginning)
//       | OutEdgeList | VertexList | Performance |
//       |    listS    |   vecS     |     25.2    |
//       |    vecS     |   vecS     |     23.4    |
//
//     * Didn't try adjacency_matrix since our graph is sparse
//     ( Also one can check BGL book, performance section )
//
//    Decision:
//     * Alpha_expansion_graph_cut_boost: use adjacency_list<vecS, listS> without
//       pre-allocating vertex-list.
//
// 2) With Boykov-Kolmogorov MAXFLOW software:
//   (http://pub.ist.ac.at/~vnk/software/maxflow-v2.21.src.tar.gz)
//                                  | Performance |
//                                  |     3.1     |
//     * Alpha_expansion_graph_cut_boykov_kolmogorov provides an implementation.
//       MAXFLOW does not provide any option for pre-allocation (It is possible with v_3.02 though).
//
// Typical Benchmark result provided by Ilker
//                                 | construction of vertices  |  construction of edges    | graph cut  | Total
//   -----------------------------------------------------------------------------------------------------------
//   boost with an adjacency list  |         1.53              | 1.51                      |  3.00      | 6.04
//   boost with CSR                | 0.11 (gather in a vector) | 0.15 (gather in a vector) |  2.67      | 2.93
//   MaxFlow                       |       0.042               | 0.076                     |  1.043     | 1.161
//
// The main issue for now with CSR is the construction of the opposite edge map that is too costly,
// since it is done by exploring all edges to find opposite
////////////////////////////////////////////////////////////////////////////////////////

} // namespace internal

/**
 * @brief Implements alpha-expansion graph cut algorithm.
 *
 * For representing graph, it uses adjacency_list with OutEdgeList = vecS, VertexList = listS.
 * Also no pre-allocation is made for vertex-list.
 */
class Alpha_expansion_boost_adjacency_list_impl
{
private:
  typedef boost::adjacency_list_traits<boost::vecS, boost::listS, boost::directedS>
  Adjacency_list_traits;

  typedef boost::adjacency_list<boost::vecS, boost::listS, boost::directedS,
          // 4 vertex properties
          boost::property<boost::vertex_index_t, std::size_t,
          boost::property<boost::vertex_color_t, boost::default_color_type,
          boost::property<boost::vertex_distance_t, double,
          boost::property<boost::vertex_predecessor_t, Adjacency_list_traits::edge_descriptor >
          > > >,
          // 3 edge properties
          boost::property<boost::edge_capacity_t, double,
          boost::property<boost::edge_residual_capacity_t, double,
          boost::property<boost::edge_reverse_t, Adjacency_list_traits::edge_descriptor> >
          > > Graph;

  typedef boost::graph_traits<Graph> Traits;
  typedef boost::color_traits<boost::default_color_type> ColorTraits;

public:

  typedef Traits::vertex_descriptor Vertex_descriptor;
  typedef Traits::vertex_iterator   Vertex_iterator;
  typedef Traits::edge_descriptor   Edge_descriptor;
  typedef Traits::edge_iterator     Edge_iterator;

private:

  Graph graph;
  Vertex_descriptor cluster_source;
  Vertex_descriptor cluster_sink;

public:

  void clear_graph()
  {
    graph.clear();
    cluster_source = boost::add_vertex(graph);
    cluster_sink = boost::add_vertex(graph);
  }

  Vertex_descriptor add_vertex()
  {
    return boost::add_vertex(graph);
  }

  void add_tweight (Vertex_descriptor& v, double w1, double w2)
  {
    add_edge (cluster_source, v, w1, 0);
    add_edge (v, cluster_sink, w2, 0);
  }

  void init_vertices()
  {
    // initialize vertex indices, it is necessary since we are using VertexList = listS
    Vertex_iterator v_begin, v_end;
    Traits::vertices_size_type index = 0;
    for(boost::tie(v_begin, v_end) = vertices(graph); v_begin != v_end; ++v_begin) {
      boost::put(boost::vertex_index, graph, *v_begin, index++);
    }
  }

  double max_flow()
  {
    return boost::boykov_kolmogorov_max_flow(graph, cluster_source,
                                                      cluster_sink);
  }

  template <typename VertexLabelMap, typename InputVertexDescriptor>
  void update(VertexLabelMap vertex_label_map,
              const std::vector<Vertex_descriptor>& inserted_vertices,
              InputVertexDescriptor vd,
              std::size_t vertex_i,
              std::size_t alpha)
  {
    boost::default_color_type color = boost::get(boost::vertex_color, graph,
                                                 inserted_vertices[vertex_i]);
    if(std::size_t(get (vertex_label_map, vd)) != alpha
       && color == ColorTraits::white()) //new comers (expansion occurs)
      put (vertex_label_map, vd,
           static_cast<typename boost::property_traits<VertexLabelMap>::value_type>(alpha));
  }

  void add_edge (Vertex_descriptor& v1, Vertex_descriptor& v2, double w1, double w2)
  {
    Edge_descriptor v1_v2, v2_v1;
    bool v1_v2_added, v2_v1_added;

    boost::tie(v1_v2, v1_v2_added) = boost::add_edge(v1, v2, graph);
    boost::tie(v2_v1, v2_v1_added) = boost::add_edge(v2, v1, graph);

    CGAL_assertion(v1_v2_added && v2_v1_added);
    //put edge capacities
    boost::put(boost::edge_reverse, graph, v1_v2, v2_v1);
    boost::put(boost::edge_reverse, graph, v2_v1, v1_v2);

    //map reverse edges
    boost::put(boost::edge_capacity, graph, v1_v2, w1);
    boost::put(boost::edge_capacity, graph, v2_v1, w2);

  }
};

// another implementation using compressed_sparse_row_graph
// for now there is a performance problem while setting reverse edges
// if that can be solved, it is faster than Alpha_expansion_graph_cut_boost
class Alpha_expansion_boost_compressed_sparse_row_impl
{
private:
  // CSR only accepts bundled props
  struct VertexP {
    boost::default_color_type vertex_color;
    double vertex_distance_t;
    // ? do not now there is another way to take it, I think since edge_descriptor does not rely on properties
    // this should be fine...
    boost::compressed_sparse_row_graph<boost::directedS>::edge_descriptor
    vertex_predecessor;
  };

  struct EdgeP {
    double edge_capacity;
    double edge_residual_capacity;
    boost::compressed_sparse_row_graph<boost::directedS>::edge_descriptor
    edge_reverse;
  };

  typedef boost::compressed_sparse_row_graph<boost::directedS,
          VertexP, EdgeP> Graph;

  typedef boost::graph_traits<Graph> Traits;
  typedef boost::color_traits<boost::default_color_type> ColorTraits;

public:

  typedef Traits::vertex_descriptor Vertex_descriptor;
  typedef Traits::vertex_iterator   Vertex_iterator;
  typedef Traits::edge_descriptor   Edge_descriptor;
  typedef Traits::edge_iterator     Edge_iterator;

private:

  Graph graph;
  std::size_t nb_vertices;
  std::vector<std::pair<std::size_t, std::size_t> > edge_map;
  std::vector<EdgeP>                edge_map_weights;

public:
  void clear_graph()
  {
    nb_vertices = 2;
    edge_map.clear();
    edge_map_weights.clear();
    // edge_map.reserve(labels.size() *
    //                  8); // there is no way to know exact edge count, it is a heuristic value
    // edge_map_weights.reserve(labels.size() * 8);
  }

  Vertex_descriptor add_vertex()
  {
    return (nb_vertices ++);
  }

  void add_tweight (Vertex_descriptor& v, double w1, double w2)
  {
    add_edge (0, v, w1, 0);
    add_edge (v, 1, w2, 0);
  }

  void init_vertices()
  {
    graph = Graph(boost::edges_are_unsorted, edge_map.begin(), edge_map.end(),
                  edge_map_weights.begin(), nb_vertices);

    // PERFORMANCE PROBLEM
    // need to set reverse edge map, I guess there is no way to do that before creating the graph
    // since we do not have edge_descs
    // however from our edge_map, we know that each (2i, 2i + 1) is reverse pairs, how to facilitate that ?
    // will look it back
    Graph::edge_iterator ei, ee;
    for(boost::tie(ei, ee) = boost::edges(graph); ei != ee; ++ei) {
      Graph::vertex_descriptor v1 = boost::source(*ei, graph);
      Graph::vertex_descriptor v2 = boost::target(*ei, graph);
      std::pair<Graph::edge_descriptor, bool> opp_edge = boost::edge(v2, v1, graph);

      CGAL_assertion(opp_edge.second);
      graph[opp_edge.first].edge_reverse =
        *ei; // and edge_reverse of *ei will be (or already have been) set by the opp_edge
    }
  }

  double max_flow()
  {
    // since properties are bundled, defaults does not work need to specify them
    return boost::boykov_kolmogorov_max_flow
      (graph,
       boost::get(&EdgeP::edge_capacity, graph),
       boost::get(&EdgeP::edge_residual_capacity, graph),
       boost::get(&EdgeP::edge_reverse, graph),
       boost::get(&VertexP::vertex_predecessor, graph),
       boost::get(&VertexP::vertex_color, graph),
       boost::get(&VertexP::vertex_distance_t, graph),
       boost::get(boost::vertex_index,
                  graph), // this is not bundled, get it from graph (CRS provides one)
       0, 1);
  }

  template <typename VertexLabelMap, typename InputVertexDescriptor>
  void update(VertexLabelMap vertex_label_map,
              const std::vector<Vertex_descriptor>&,
              InputVertexDescriptor vd,
              std::size_t vertex_i,
              std::size_t alpha)
  {
    boost::default_color_type color =  graph[vertex_i + 2].vertex_color;
    if(get(vertex_label_map, vd)!= alpha
       && color == ColorTraits::white()) //new comers (expansion occurs)
      put(vertex_label_map, vd, alpha);
  }

  void add_edge(Vertex_descriptor v1, Vertex_descriptor v2, double w1, double w2)
  {
    edge_map.push_back(std::make_pair(v1, v2));
    EdgeP p1;
    p1.edge_capacity = w1;
    edge_map_weights.push_back(p1);

    edge_map.push_back(std::make_pair(v2, v1));
    EdgeP p2;
    p2.edge_capacity = w2;
    edge_map_weights.push_back(p2);
  }


};

// tags
struct Alpha_expansion_boost_adjacency_list_tag { };
struct Alpha_expansion_boost_compressed_sparse_row_tag { };
struct Alpha_expansion_MaxFlow_tag { };

// forward declaration
class Alpha_expansion_MaxFlow_impl;

/// \endcond

// NOTE: latest performances check (2019-07-22)
//
// Using a random graph with 50000 vertices, 100000 edges and 30 labels:
//
// METHOD                 TIMING           MEMORY
// Boost Adjacency list   49s              122MiB
// Boost CSR              187s             77MiB
// MaxFlow                12s              717MiB

/**
   \ingroup PkgBGLPartition

   regularizes a partition of a graph into `n` labels using the alpha
   expansion algorithm \cgalCite{Boykov2001FastApproximate}.

   For a graph \f$(V,E)\f$, this function computes a partition `f`
   that minimizes the following cost function:

   \f[
   \mathrm{C}(f) = \sum_{\{v0,v1\} \in E} C_E(v0,v1) + \sum_{v \in V} C_V(f_v)
   \f]

   where \f$C_E(v0,v1)\f$ is the edge cost of assigning a different
   label to \f$v0\f$ and \f$v1\f$, and \f$C_V(f_v)\f$ is the vertex
   cost of assigning the label \f$f\f$ to the vertex \f$v\f$.

   \tparam InputGraph a model of `VertexAndEdgeListGraph`

   \tparam EdgeCostMap a model of `ReadablePropertyMap` with
   `boost::graph_traits<InputGraph>::%edge_descriptor` as key and `double`
   as value

   \tparam VertexLabelCostMap a model of `ReadablePropertyMap`
   with `boost::graph_traits<InputGraph>::%vertex_descriptor` as key and
   `std::vector<double>` as value

   \tparam VertexLabelMap a model of `ReadWritePropertyMap` with
   `boost::graph_traits<InputGraph>::%vertex_descriptor` as key and
   `std::size_t` as value

   \tparam NamedParameters a sequence of named parameters

   \param input_graph the input graph.

   \param edge_cost_map a property map providing the weight of each
   edge.

   \param vertex_label_map a property map providing the label of each
   vertex. This map will be updated by the algorithm with the
   regularized version of the partition.

   \param vertex_label_cost_map a property map providing, for each
   vertex, an `std::vector` containing the cost of this vertex to
   belong to each label. Each `std::vector` should have the same size
   `n` (which is the number of labels), each label being indexed from
   `0` to `n-1`. For example, `get(vertex_label_cost_map,
   vd)[label_idx]` returns the cost of vertex `vd` to belong to the
   label `label_idx`.

   \param np an optional sequence of \ref bgl_namedparameters "Named Parameters" among the ones listed below

   \cgalNamedParamsBegin
     \cgalParamNBegin{vertex_index_map}
       \cgalParamDescription{a property map associating to each vertex of `input_graph` a unique index between `0` and `num_vertices(input_graph) - 1`}
       \cgalParamType{a class model of `ReadablePropertyMap` with `boost::graph_traits<InputGraph>::%vertex_descriptor`
                      as key type and `std::size_t` as value type}
       \cgalParamDefault{an automatically indexed internal map}
       \cgalParamExtra{If this parameter is not passed, internal machinery will create and initialize
                       a face index property map, either using the internal property map if it exists
                       or using an external map. The latter might result in  - slightly - worsened performance
                       in case of non-constant complexity for index access.}
     \cgalParamNEnd

     \cgalParamNBegin{implementation_tag}
       \cgalParamDescription{a tag used to select which implementation of the alpha expansion should be used.
                             Available implementation tags are:
                             - `CGAL::Alpha_expansion_boost_adjacency_list`
                             - `CGAL::Alpha_expansion_boost_compressed_sparse_row_tag`
                             - `CGAL::Alpha_expansion_MaxFlow_tag`}
       \cgalParamDefault{`CGAL::Alpha_expansion_boost_adjacency_list`}
     \cgalParamNEnd
   \cgalNamedParamsEnd

   \note The `MaxFlow` implementation is provided by the \ref PkgSurfaceMeshSegmentationRef
   under GPL license. The header `<CGAL/boost/graph/Alpha_expansion_MaxFlow_tag.h>`
   must be included if users want to use this implementation.
*/
template <typename InputGraph,
          typename EdgeCostMap,
          typename VertexLabelCostMap,
          typename VertexLabelMap,
          typename NamedParameters = parameters::Default_named_parameters>
double alpha_expansion_graphcut (const InputGraph& input_graph,
                                 EdgeCostMap edge_cost_map,
                                 VertexLabelCostMap vertex_label_cost_map,
                                 VertexLabelMap vertex_label_map,
                                 const NamedParameters& np = parameters::default_values())
{
  using parameters::choose_parameter;
  using parameters::get_parameter;

  typedef boost::graph_traits<InputGraph> GT;
  typedef typename GT::edge_descriptor input_edge_descriptor;
  typedef typename GT::vertex_descriptor input_vertex_descriptor;

  typedef typename GetInitializedVertexIndexMap<InputGraph, NamedParameters>::type VertexIndexMap;
  VertexIndexMap vertex_index_map = CGAL::get_initialized_vertex_index_map(input_graph, np);

  typedef typename GetImplementationTag<NamedParameters>::type Impl_tag;

  // select implementation
  typedef typename std::conditional
    <std::is_same<Impl_tag, Alpha_expansion_boost_adjacency_list_tag>::value,
     Alpha_expansion_boost_adjacency_list_impl,
     typename std::conditional
     <std::is_same<Impl_tag, Alpha_expansion_boost_compressed_sparse_row_tag>::value,
      Alpha_expansion_boost_compressed_sparse_row_impl,
      Alpha_expansion_MaxFlow_impl>::type>::type
    Alpha_expansion;

  typedef typename Alpha_expansion::Vertex_descriptor Vertex_descriptor;

  Alpha_expansion alpha_expansion;

  // TODO: check this hardcoded parameter
  const double tolerance = 1e-10;

  double min_cut = (std::numeric_limits<double>::max)();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
  double vertex_creation_time, edge_creation_time, cut_time;
  vertex_creation_time = edge_creation_time = cut_time = 0.0;
#endif

  std::vector<Vertex_descriptor> inserted_vertices;
  inserted_vertices.resize(num_vertices (input_graph));

  std::size_t number_of_labels = get(vertex_label_cost_map, *(vertices(input_graph).first)).size();

  bool success;
  bool full_loop = false;
  do {
    success = false;

    for (std::size_t alpha = 0; alpha < number_of_labels; ++ alpha)
    {
      alpha_expansion.clear_graph();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
      Timer timer;
      timer.start();
#endif

      // For E-Data
      // add every input vertex as a vertex to the graph, put edges to source & sink vertices
      for (input_vertex_descriptor vd : CGAL::make_range(vertices(input_graph)))
      {
        std::size_t vertex_i = get(vertex_index_map, vd);
        Vertex_descriptor new_vertex = alpha_expansion.add_vertex();
        inserted_vertices[vertex_i] = new_vertex;
        double source_weight = get(vertex_label_cost_map, vd)[alpha];
        // since it is expansion move, current alpha labeled vertices will be assigned to alpha again,
        // making sink_weight 'infinity' guarantee this.
        double sink_weight = (std::size_t(get(vertex_label_map, vd)) == alpha ?
                              (std::numeric_limits<double>::max)()
                              : get(vertex_label_cost_map, vd)[get(vertex_label_map, vd)]);

        alpha_expansion.add_tweight(new_vertex, source_weight, sink_weight);
      }
#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
      vertex_creation_time += timer.time();
      timer.reset();
#endif

      // For E-Smooth
      // add edge between every vertex,
      for (input_edge_descriptor ed : CGAL::make_range(edges(input_graph)))
      {
        input_vertex_descriptor vd1 = source(ed, input_graph);
        input_vertex_descriptor vd2 = target(ed, input_graph);
        std::size_t idx1 = get (vertex_index_map, vd1);
        std::size_t idx2 = get (vertex_index_map, vd2);

        double weight = get (edge_cost_map, ed);

        Vertex_descriptor v1 = inserted_vertices[idx1],
          v2 = inserted_vertices[idx2];

        std::size_t label_1 = get (vertex_label_map, vd1);
        std::size_t label_2 = get (vertex_label_map, vd2);
        if(label_1 == label_2) {
          if(label_1 != alpha) {
            alpha_expansion.add_edge(v1, v2, weight, weight);
          }
        } else {
          Vertex_descriptor inbetween = alpha_expansion.add_vertex();

          double w1 = (label_1 == alpha) ? 0 : weight;
          double w2 = (label_2 == alpha) ? 0 : weight;
          alpha_expansion.add_edge(inbetween, v1, w1, w1);
          alpha_expansion.add_edge(inbetween, v2, w2, w2);
          alpha_expansion.add_tweight(inbetween, 0., weight);
        }
      }
#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
      edge_creation_time += timer.time();
#endif

      alpha_expansion.init_vertices();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
      timer.reset();
#endif

      double flow = alpha_expansion.max_flow();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
      cut_time += timer.time();
#endif
      if (full_loop && flow >= min_cut)
        continue;

      if(min_cut - flow <= flow * tolerance) {
        continue;
      }
      min_cut = flow;
      success = true;
      //update labeling
      for (input_vertex_descriptor vd : CGAL::make_range(vertices (input_graph)))
      {
        std::size_t vertex_i = get (vertex_index_map, vd);
        alpha_expansion.update(vertex_label_map, inserted_vertices, vd, vertex_i, alpha);
      }
      }
    full_loop = true;
    } while (success);

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    CGAL_TRACE_STREAM << "vertex creation time: " << vertex_creation_time <<
      std::endl;
    CGAL_TRACE_STREAM << "edge creation time: " << edge_creation_time << std::endl;
    CGAL_TRACE_STREAM << "max flow algorithm time: " << cut_time << std::endl;
#endif

    return min_cut;
  }


  template <typename InputGraph,
  typename EdgeCostMap,
    typename VertexLabelCostMap,
    typename VertexLabelMap,
    typename NamedParameters>
    double min_cut(const InputGraph& input_graph,
      EdgeCostMap edge_cost_map,
      VertexLabelCostMap vertex_label_cost_map,
      VertexLabelMap vertex_label_map,
      const NamedParameters& np)
  {
    using parameters::choose_parameter;
    using parameters::get_parameter;

    typedef boost::graph_traits<InputGraph> GT;
    typedef typename GT::edge_descriptor input_edge_descriptor;
    typedef typename GT::vertex_descriptor input_vertex_descriptor;

    typedef typename GetInitializedVertexIndexMap<InputGraph, NamedParameters>::type VertexIndexMap;
    VertexIndexMap vertex_index_map = CGAL::get_initialized_vertex_index_map(input_graph, np);

    typedef typename GetImplementationTag<NamedParameters>::type Impl_tag;

    // select implementation
    typedef typename std::conditional
      <std::is_same<Impl_tag, Alpha_expansion_boost_adjacency_list_tag>::value,
      Alpha_expansion_boost_adjacency_list_impl,
      typename std::conditional
      <std::is_same<Impl_tag, Alpha_expansion_boost_compressed_sparse_row_tag>::value,
      Alpha_expansion_boost_compressed_sparse_row_impl,
      Alpha_expansion_MaxFlow_impl>::type>::type
      Alpha_expansion;

    typedef typename Alpha_expansion::Vertex_descriptor Vertex_descriptor;

    Alpha_expansion graph;

    double min_cut = (std::numeric_limits<double>::max)();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    double vertex_creation_time, edge_creation_time, cut_time;
    vertex_creation_time = edge_creation_time = cut_time = 0.0;
#endif

    std::vector<Vertex_descriptor> inserted_vertices;
    inserted_vertices.resize(num_vertices(input_graph));

    graph.clear_graph();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    Timer timer;
    timer.start();
#endif

    // For E-Data
    // add every input vertex as a vertex to the graph, put edges to source & sink vertices
    for (input_vertex_descriptor vd : CGAL::make_range(vertices(input_graph)))
    {
      std::size_t vertex_i = get(vertex_index_map, vd);
      Vertex_descriptor new_vertex = graph.add_vertex();
      inserted_vertices[vertex_i] = new_vertex;

      double source_weight = get(vertex_label_cost_map, vd)[0];
      double sink_weight = get(vertex_label_cost_map, vd)[0];

      graph.add_tweight(new_vertex, source_weight, sink_weight);
    }
#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    vertex_creation_time += timer.time();
    timer.reset();
#endif

    // For E-Smooth
    // add edge between every vertex,
    for (input_edge_descriptor ed : CGAL::make_range(edges(input_graph)))
    {
      input_vertex_descriptor vd1 = source(ed, input_graph);
      input_vertex_descriptor vd2 = target(ed, input_graph);
      std::size_t idx1 = get(vertex_index_map, vd1);
      std::size_t idx2 = get(vertex_index_map, vd2);

      double weight = get(edge_cost_map, ed);

      Vertex_descriptor v1 = inserted_vertices[idx1],
        v2 = inserted_vertices[idx2];

      graph.add_edge(v1, v2, weight, weight);
    }

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    edge_creation_time += timer.time();
#endif

    graph.init_vertices();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    timer.reset();
#endif

    min_cut = graph.max_flow();

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    cut_time += timer.time();
#endif

/*
    //update labeling
    for (input_vertex_descriptor vd : CGAL::make_range(vertices(input_graph)))
    {
      std::size_t vertex_i = get(vertex_index_map, vd);
      alpha_expansion.update(vertex_label_map, inserted_vertices, vd, vertex_i, alpha);
    }*/

    graph.get_labels(vertex_index_map, vertex_label_map, inserted_vertices, CGAL::make_range(vertices(input_graph)));
/*
    //update labeling
    for (auto vd : vertices(input_graph)) {
      std::size_t idx = get(vertex_index_map, vd);
      int label = graph.get_label(inserted_vertices[idx]);
      put(vertex_label_map, vd, label);
    }

    for (input_vertex_descriptor vd : CGAL::make_range(vertices(input_graph)))
    {
      std::size_t vertex_i = get(vertex_index_map, vd);
      graph.update(vertex_label_map, inserted_vertices, vd, vertex_i, alpha);
    }*/

#ifdef CGAL_SEGMENTATION_BENCH_GRAPHCUT
    CGAL_TRACE_STREAM << "vertex creation time: " << vertex_creation_time <<
      std::endl;
    CGAL_TRACE_STREAM << "edge creation time: " << edge_creation_time << std::endl;
    CGAL_TRACE_STREAM << "max flow algorithm time: " << cut_time << std::endl;
#endif

    return min_cut;
  }

/// \cond SKIP_IN_MANUAL

// Old API
inline double alpha_expansion_graphcut (const std::vector<std::pair<std::size_t, std::size_t> >& edges,
                                        const std::vector<double>& edge_costs,
                                        const std::vector<std::vector<double> >& cost_matrix,
                                        std::vector<std::size_t>& labels)
{
  internal::Alpha_expansion_old_API_wrapper_graph graph (edges, edge_costs, cost_matrix, labels);
  return alpha_expansion_graphcut(graph,
                                  graph.edge_cost_map(),
                                  graph.vertex_label_cost_map(),
                                  graph.vertex_label_map(),
                                  CGAL::parameters::vertex_index_map (graph.vertex_index_map()));
}

template <typename AlphaExpansionImplementationTag>
double alpha_expansion_graphcut (const std::vector<std::pair<std::size_t, std::size_t> >& edges,
                                 const std::vector<double>& edge_costs,
                                 const std::vector<std::vector<double> >& cost_matrix,
                                 std::vector<std::size_t>& labels,
                                 const AlphaExpansionImplementationTag&)
{
  internal::Alpha_expansion_old_API_wrapper_graph graph (edges, edge_costs, cost_matrix, labels);

  return alpha_expansion_graphcut(graph,
                                  graph.edge_cost_map(),
                                  graph.vertex_label_cost_map(),
                                  graph.vertex_label_map(),
                                  CGAL::parameters::vertex_index_map (graph.vertex_index_map()).
                                  implementation_tag (AlphaExpansionImplementationTag()));
}

template <typename AlphaExpansionImplementationTag>
double min_cut(const std::vector<std::pair<std::size_t, std::size_t> >& edges,
  const std::vector<double>& edge_costs,
  const std::vector<std::vector<double> >& cost_matrix,
  std::vector<std::size_t>& labels,
  const AlphaExpansionImplementationTag&)
{
  internal::Alpha_expansion_old_API_wrapper_graph graph(edges, edge_costs, cost_matrix, labels);

  return min_cut(graph,
    graph.edge_cost_map(),
    graph.vertex_label_cost_map(),
    graph.vertex_label_map(),
    CGAL::parameters::vertex_index_map(graph.vertex_index_map()).
    implementation_tag(AlphaExpansionImplementationTag()));
}
/// \endcond

}//namespace CGAL

namespace boost
{

template <>
struct property_map<CGAL::internal::Alpha_expansion_old_API_wrapper_graph, boost::vertex_index_t>
{
  typedef CGAL::internal::Alpha_expansion_old_API_wrapper_graph::Vertex_index_map type;
  typedef CGAL::internal::Alpha_expansion_old_API_wrapper_graph::Vertex_index_map const_type;
};
}

#endif //CGAL_BOOST_GRAPH_ALPHA_EXPANSION_GRAPHCUT_H

