# Data Visualization for QTL Experiments

## Documentation for package ‘qtl2ggplot’ version 1.2.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

autoplot.genes | Plot gene locations for a genomic interval
autoplot.listof_scan1coef | Plot of object of class listof_scan1coeff
autoplot.scan1 | Plot a genome scan
autoplot.scan1coef | Plot QTL effects along chromosome
color_patterns_get | Set up col, pattern and group for plotting.
color_patterns_pheno | Set up col, pattern, shape and group for plotting.
color_patterns_set | Set up colors for patterns or points
ggplot_coef | Plot QTL effects along chromosome
ggplot_coefCC | Plot QTL effects along chromosome
ggplot_genes | Plot gene locations for a genomic interval
ggplot_genes_internal | GGPlot internal routine for ggplot_genes
ggplot_listof_scan1coef | Plot of object of class listof_scan1coeff
ggplot_onegeno | Plot one individual's genome-wide genotypes
ggplot_peaks | Plot QTL peak locations
ggplot_pxg | Plot phenotype vs genotype
ggplot_scan1 | Plot a genome scan
ggplot_scan1_internal | Plot a genome scan
ggplot_snpasso | Plot SNP associations
listof_scan1coef | List of scan1coef objects
mean_pxg | Plot phenotype vs genotype
sdp_to_pattern | Convert sdp to pattern
subset.listof_scan1coef | List of scan1coef objects
subset_listof_scan1coef | List of scan1coef objects
summary.listof_scan1coef | List of scan1coef objects
summary.scan1 | Summary of scan1 object
summary.scan1coef | List of scan1coef objects
summary_listof_scan1coef | List of scan1coef objects
summary_scan1 | Summary of scan1 object
summary_scan1coef | List of scan1coef objects
[.listof_scan1coef | List of scan1coef objects