Simulate Forensic DNA Mixtures

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Documentation for package ‘simDNAmixtures’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

allele_specific_stutter_model	Stutter model where the expected stutter rate depends on the allele and locus
drop_model	Defines a (semi-continuous) drop model
gamma_model	Defines a gamma model for peak height variability
gf_configuration	Stutters and size regressions for a GlobalFiler 3500 kit
global_stutter_model	Global stutter model where the expected stutter rate is constant across alleles and loci
kits	Properties such as loci, dye, sizes for most standard forensic kits
log_normal_model	Defines a log normal model for peak height variability
read_allele_freqs	Read allele frequencies in FSIgen format (.csv)
read_size_regression	Reads a size regression file
read_STRmix_kit_settings	Read STRmix Kit Settings
read_stutter_exceptions	Reads a stutter exceptions file with overrides for expected stutter ratios
read_stutter_regression	Reads a stutter regression file
read_wide_table	Read wide table (.txt) with Allele1, Allele2, ... columns as is
sample_contributor_genotypes	Sample genotypes for mixture contributors according to allele frequencies
sample_drop_model	Sample drop model(s) with parameters according to priors
sample_gamma_model	Sample gamma model(s) with parameters according to priors
sample_genotype	Sample a genotype according to allele frequencies
sample_log_normal_model	Sample log normal model(s) with parameters according to priors
sample_log_normal_parameters	Sample log normal model parameters according to priors
sample_log_normal_stutter_variance	Sample log normal stutter variance parameters according to priors
sample_LSAE	Sample Locus Specific Amplification Efficiency (LSAE) according to prior
sample_many_pedigree_genotypes	Sample (many) genotypes for pedigree members according to allele frequencies by allele dropping and possibly taking linkage into account by simulating recombination.
sample_mixtures	Sample mixtures with random genotypes and random parameters according to priors
sample_mixtures_fixed_parameters	Sample mixtures with known genotypes and fixed parameters
sample_mixtures_from_genotypes	Sample mixtures with known genotypes and random parameters according to priors
sample_mixture_from_genotypes	Sample mixture profile with provided genotypes
sample_offspring	Sample offspring from two parental genotypes
sample_pedigree_genotypes	Sample genotypes for pedigree according to allele frequencies by allele dropping.
SMASH_to_wide_table	Converts SMASH (SampleName, Marker, Allele, Size, Height) data to a wide table
stutter_type	Defines a stutter type to be used in the allele specific stutter model.