CellDEEP: Cell DiffErential Expression by Pooling ('CellDEEP')
Pool cells together before running differentially expression (DE) analysis. Tell 'CellDEEP' how many cells you want to pool together (which shall be determined by the overall cell number of data), then run DE analysis. Cheng et al. (2026) <doi:10.64898/2026.03.09.710522>.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.5) |
| Imports: | Seurat |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.2.3) |
| Published: | 2026-03-29 |
| DOI: | 10.32614/CRAN.package.CellDEEP (may not be active yet) |
| Author: | Yiyi Cheng  [aut,
cre] |
| Maintainer: | Yiyi Cheng <2593244c at student.gla.ac.uk> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | CellDEEP results |
Documentation:
| Reference manual: | CellDEEP.html , CellDEEP.pdf |
| Vignettes: |
CellDEEP Quick Start (source, R code) |
Downloads:
| Package source: | CellDEEP_1.0.1.tar.gz |
| Windows binaries: | r-devel: CellDEEP_1.0.1.zip, r-release: not available, r-oldrel: CellDEEP_1.0.1.zip |
| macOS binaries: | r-release (arm64): CellDEEP_1.0.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): CellDEEP_1.0.1.tgz, r-oldrel (x86_64): CellDEEP_1.0.1.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=CellDEEP to link to this page.