Last updated on 2025-12-09 09:49:56 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.3 | 4.55 | 149.72 | 154.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.3 | 3.74 | 112.69 | 116.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.3 | 10.00 | 230.13 | 240.13 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.3 | 10.00 | 244.67 | 254.67 | OK | |
| r-devel-windows-x86_64 | 1.1.3 | 8.00 | 202.00 | 210.00 | OK | |
| r-patched-linux-x86_64 | 1.1.3 | 6.06 | 140.71 | 146.77 | OK | |
| r-release-linux-x86_64 | 1.1.3 | 4.73 | 142.21 | 146.94 | OK | |
| r-release-macos-arm64 | 1.1.3 | 1.00 | 45.00 | 46.00 | ERROR | |
| r-release-macos-x86_64 | 1.1.3 | 5.00 | 178.00 | 183.00 | OK | |
| r-release-windows-x86_64 | 1.1.3 | 8.00 | 199.00 | 207.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.3 | 1.00 | 51.00 | 52.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.3 | 7.00 | 202.00 | 209.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.3 | 10.00 | 261.00 | 271.00 | OK |
Version: 1.1.3
Check: examples
Result: ERROR
Running examples in ‘logitr-Ex.R’ failed
The error most likely occurred in:
> ### Name: logitr
> ### Title: The main function for estimating logit models
> ### Aliases: logitr
> ### Keywords: logit logitr mixed mnl mxl willingness-to-pay wtp
>
> ### ** Examples
>
> # For more detailed examples, visit
> # https://jhelvy.github.io/logitr/articles/
>
> library(logitr)
>
> # Estimate a MNL model in the Preference space
> mnl_pref <- logitr(
+ data = yogurt,
+ outcome = "choice",
+ obsID = "obsID",
+ pars = c("price", "feat", "brand")
+ )
Running model...
Done!
>
> # Estimate a MNL model in the WTP space, using a 5-run multistart
> mnl_wtp <- logitr(
+ data = yogurt,
+ outcome = "choice",
+ obsID = "obsID",
+ pars = c("feat", "brand"),
+ scalePar = "price",
+ numMultiStarts = 5
+ )
Running multistart...
Random starting point iterations: 5
Number of cores: 15
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, eval_f(x0, ...) mi = mi, opts = mi$options)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler) }, error = function(e) {
}) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) FUN(X[[i]], ...) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) {
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
An irrecoverable exception occurred. R is aborting now ...
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
Error in names(x) <- value :
'names' attribute [3] must be the same length as the vector [0]
Calls: logitr -> getMultistartSummary -> colnames<-
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘basic_usage.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
*** caught segfault ***
address 0x110, cause 'invalid permissions'
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
*** caught segfault ***
*** caught segfault ***
address 0x110, cause 'invalid permissions'
address 0x110, cause 'invalid permissions'
*** caught segfault ***
Traceback:
address 0x110, cause 'invalid permissions'
47: process_group(group)
48:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {}) else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error))
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n")53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine)
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
}}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", 2: TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
eval_f(x0, ...)
3:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, mi = mi, opts = mi$options) classes)) tryInvokeRestart("muffleWarning"))
2: eval_f(x0, ...) 4: 21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23:
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10) mi = mi, opts = mi$options)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)29:
4:
Traceback:
withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { 1:
Traceback:
*** caught segfault ***
watcher$push(cnd) 6: 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) }tryCatchList(expr, classes, parentenv, handlers)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
address 0x110, cause 'invalid permissions'
if (on_message$silence) { 2: eval_f(x0, ...)
Traceback:
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
2: 7:
invokeRestart("muffleMessage")doTryCatch(return(expr), name, parentenv, handler) 5: 1: tryCatch({
tryCatchOne(expr, names, parentenv, handlers[[1L]])eval_f(x0, ...) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: }mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
6: }, warning = function (cnd) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
tryCatchList(expr, classes, parentenv, handlers) 2:
4: eval_f(x0, ...) mi = mi, opts = mi$options)tryCatchList(expr, classes, parentenv, handlers)}, error = function(e) {{
})doTryCatch(return(expr), name, parentenv, handler) if (getOption("warn") >= 2 || getOption("warn") < 0) { 7:
3:
Traceback:
nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 1: mi = mi, opts = mi$options)
return() 7: 8: 4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
system.time({tryCatch({nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: 6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$modeltryCatch({ model <- mi$modeltryCatch({ result <- NULL 6: } tryCatch({ watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, model$iterations <- result$iterations mi = mi, opts = mi$options) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, tryCatchList(expr, classes, parentenv, handlers)
Traceback:
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers) model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...) result <- NULL 1: tryCatch({
7: 31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
mi = mi, opts = mi$options)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)}, error = function(e) {
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: tryCatch({}, error = function(e) { mi = mi, opts = mi$options)
}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE33: })})FUN(X[[i]], ...)
doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4:
10: 11: 0LdoTryCatch(return(expr), name, parentenv, handler)
12:
7:
doTryCatch(return(expr), name, parentenv, handler) model$coefficients <- result$solution result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, lapply(X = S, FUN = FUN, ...) 8: mi = mi, opts = mi$options)}, error = function(e) {})
8:
system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) {system.time({ 5: model$logLik <- as.numeric(-1 * result$objective) model <- mi$model else 2LtryCatch({ model$iterations <- result$iterations model$status <- result$status })
model$message <- result$message }})
tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 8: if (!is.null(result)) { 9: mi = mi, opts = mi$options)system.time({ }, output_handler = knit_handlers(options$render, options)))FUN(X[[i]], ...)
model <- mi$model result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, }, error = function(e) {tryCatchOne(expr, names, parentenv, handlers[[1L]]) result <- NULL mi = mi, opts = mi$options)
10: }, error = function(e) {lapply(X = S, FUN = FUN, ...)13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")11: }) model$fail <- FALSE result <- NULL
tryCatch({
model$coefficients <- result$solution tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)doTryCatch(return(expr), name, parentenv, handler)11: })44: 8: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, if (w > LONG)
mi = mi, opts = mi$options) }, error = function(e) { prefix <- paste0(prefix, "\n ")12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
doTryCatch(return(expr), name, parentenv, handler) model$logLik <- as.numeric(-1 * result$objective)
} }) 8: 48: 10: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), else prefix <- "Error : " if (!is.null(result)) { model$iterations <- result$iterations12: error = function(e) {tryCatchOne(expr, names, parentenv, handlers[[1L]])system.time({
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) {system.time({ model$fail <- FALSE model$status <- result$statuslapply(X = S, FUN = FUN, ...)13:
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") model <- mi$modeltryCatchList(expr, classes, parentenv, handlers)
14: if (progress && is.function(pb$interrupt)) model$fail <- FALSE model$message <- result$message msg <- paste0(prefix, conditionMessage(e), "\n") result <- NULLtryCatch(expr, error = function(e) { model$coefficients <- result$solution pb$interrupt() else prefix <- "Error : " .Internal(seterrmessage(msg[1L])) if (w > LONG) if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { }})
9: FUN(X[[i]], ...) if (!silent && isTRUE(getOption("show.error.messages"))) { msg <- paste0(prefix, conditionMessage(e), "\n") call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) tryCatch({ cnd = tryCatch(rlang::entrace(e), error = identity) model$coefficients <- result$solution prefix <- paste("Error in", dcall, ": ") cat(msg, file = outFile) model$logLik <- as.numeric(-1 * result$objective) .Internal(printDeferredWarnings()) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) model$logLik <- as.numeric(-1 * result$objective) } LONG <- 75L model$iterations <- result$iterations error <<- format(cnd) } model$iterations <- result$iterations sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], } type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") invisible(structure(msg, class = "try-error", condition = e)) mi = mi, opts = mi$options) model$status <- result$status }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
prefix <- paste0(prefix, "\n ") }}) else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c,
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10) else {
model$message <- result$message invisible(structure(msg, class = "try-error", condition = e)) model$status <- result$status
rlang::entrace(e) }10: }) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) model$message <- result$message }10:
lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...) classes)) tryInvokeRestart("muffleMessage"))lapply(X = S, FUN = FUN, ...)13: }
})
} else prefix <- "Error : "26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE) 9: tryCatchList(expr, classes, parentenv, handlers)18: }
11: FUN(X[[i]], ...)lapply(seq_len(cores), inner.do) }), function(loc) { setwd(wd)
}) write_utf8(res, output %n% stdout())16: 29: 23: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))19:
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")withCallingHandlers(code, message = function (cnd)
suppressMessages(suppressWarnings(parallel::mclapply(miList, doTryCatch(return(expr), name, parentenv, handler)parallel::mclapply(miList, runModel, mc.cores = numCores) paste0("\nQuitting from ", loc, if (!is.null(error)) runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)17:
LONG <- 75L
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")32: paste0("\n", rule(), error, "\n", rule()))
{ if (is.na(w)) watcher$capture_plot_and_output()with_handlers({20: 9: sm <- strsplit(conditionMessage(e), "\n")[[1L]]withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))FUN(X[[i]], ...) for (expr in tle$exprs) { w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
18: w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } if (on_message$capture) {
watcher$push(cnd) } if (on_message$silence) {lapply(seq_len(cores), inner.do)22: FUN(X[[i]], ...) invokeRestart("muffleMessage") else prefix <- "Error : "
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, ev <- withVisible(eval(expr, envir)) }
watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
12: 50: type = "b") msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile)tryCatchOne(expr, names, parentenv, handlers[[1L]])withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))
}, warning = function (cnd) .Internal(printDeferredWarnings())
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", process_file(text, output)
classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) } "brand"), scalePar = "price", numMultiStarts = 10) watcher$capture_plot_and_output(){13: 10: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))
if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e)) watcher$print_value(ev$value, ev$visible, envir) if (getOption("warn") >= 2 || getOption("warn") < 0) { } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message,
lapply(X = S, FUN = FUN, ...)})
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { return()
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) invisible(structure(msg, class = "try-error", condition = e))
22: 26: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
})
if (identical(call[[1L]], quote(doTryCatch))) stop_on_error = if (is.numeric(options$error)) options$error else {51: eval(expr, envir)
}})
27: eval(expr, envir)
28: call <- sys.call(-4L)24: watcher$capture_plot_and_output()22: if (options$error && options$include)
dcall <- deparse(call, nlines = 1L)knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) {withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) texi2pdf(file = output, clean = FALSE, quiet = quiet)15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do) if (on_warning$capture) {15: prefix <- paste("Error in", dcall, ": ") }runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
cnd <- sanitize_call(cnd) watcher$push(cnd) 0LwithCallingHandlers(expr, message = function(c) if (inherits(c, if (on_message$silence) {try(lapply(X = S, FUN = FUN, ...), silent = TRUE) } LONG <- 75L output <- find_vignette_product(name, by = "texi2pdf",
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
engine = engine)26: }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
eval(expr, envir)
27: sm <- strsplit(conditionMessage(e), "\n")[[1L]]20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())46: if (on_warning$silence) { classes)) tryInvokeRestart("muffleMessage"))19: 21: eval(expr, envir)call_block(x) invokeRestart("muffleWarning")
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) }
parallel::mclapply(miList, runModel, mc.cores = numCores)suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
20: withCallingHandlers(expr, warning = function(w) if (inherits(w,
28: 47: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) {process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }}, error = function (cnd)
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
invokeRestart("muffleMessage"){ watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { })25:
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { return() } invisible(structure(msg, class = "try-error", condition = e)) classes)) tryInvokeRestart("muffleWarning"))})}, warning = function (cnd)
logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", if (is_R_CMD_build() || is_R_CMD_check()) { if (options$error && options$include) }15: watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output(){ cnd <- sanitize_call(cnd) 0L "brand"), scalePar = "price", numMultiStarts = 10) cnd = tryCatch(rlang::entrace(e), error = identity)try(lapply(X = S, FUN = FUN, ...), silent = TRUE) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output) else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,
if (getOption("warn") >= 2 || getOption("warn") < 0) {51:
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: return()knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)21:
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
withCallingHandlers(code, message = function (cnd) suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, keep_message = if (is.numeric(options$message)) TRUE else options$message, { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd){ runModel, mc.cores = numCores))) watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) }17: FUN(X[[i]], ...) }
24:
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs) switch(on_error, continue = invokeRestart("eval_continue"), watcher$capture_plot_and_output() if (on_message$silence) { stop_on_error = if (is.numeric(options$error)) options$error else { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return()53: stop = invokeRestart("eval_stop"), error = NULL) watcher$push(cnd) if (on_warning$capture) {
cnd <- sanitize_call(cnd)25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", }) watcher$push(cnd) } } "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) if (on_message$silence) {runMultistart(modelInputs) } if (options$error && options$include) watcher$capture_plot_and_output(){ if (on_warning$capture) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) if (on_warning$silence) {vweave_rmarkdown(...)
} 0L else 2L }, output_handler = knit_handlers(options$render, options))) invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)}) if (on_message$silence) {
54: invokeRestart("muffleMessage")
invokeRestart("muffleMessage")30: 25: watcher$push(cnd)logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: } } }eval(call)engine$weave(file, quiet = quiet, encoding = enc)doWithOneRestart(return(expr), restart)}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd)
}, warning = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({
30: if (on_warning$silence) {{ for (expr in tle$exprs) {31: 49: eval(call) invokeRestart("muffleWarning") if (getOption("warn") >= 2 || getOption("warn") < 0) {37:
}}, error = function (cnd) return()31: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])55:
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) {doTryCatch(return(expr), name, parentenv, handler) }eval(call)xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE ev <- withVisible(eval(expr, envir))eval(call)
ev <- withVisible(eval(expr, envir))}, handlers) error = function(e) { watcher$capture_plot_and_output()
56: { watcher$capture_plot_and_output()tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
watcher$capture_plot_and_output() cnd <- sanitize_call(cnd)32:
if (progress && is.function(pb$interrupt)) watcher$print_value(ev$value, ev$visible, envir) watcher$capture_plot_and_output() pb$interrupt() if (on_warning$capture) { if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
watcher$push(cnd) cnd <- sanitize_call(cnd) watcher$push(cnd) }33: if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }with_handlers({
switch(on_error, continue = invokeRestart("eval_continue"), } TRUE51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: for (expr in tle$exprs) {}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) stop = invokeRestart("eval_stop"), error = NULL)32:
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) })
evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, with_handlers({ watcher$print_value(ev$value, ev$visible, envir) for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: watcher$capture_plot_and_output()53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
} TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]]) keep_message = if (is.numeric(options$message)) TRUE else options$message, ev <- withVisible(eval(expr, envir)) watcher$print_value(ev$value, ev$visible, envir) 0L stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
} else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)58:
withRestartList(expr, restarts[-nr])
watcher$capture_plot_and_output()tryCatch({42: watcher$print_value(ev$value, ev$visible, envir) TRUE
in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
36: }43: 35: in_input_dir(evaluate(code, envir = env, new_device = FALSE, }, handlers) TRUE engine$weave(file, quiet = quiet, encoding = enc)doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
45:
38: }, handlers)33: withRestartList(expr, restarts)block_exec(params)
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, doWithOneRestart(return(expr), restart)
withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: 46: setwd(startdir)call_block(x)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: keep_message = if (is.numeric(options$message)) TRUE else options$message,
47: output <- find_vignette_product(name, by = "weave", engine = engine)withRestartList(expr, restarts)33: 39: if (!have.makefile && vignette_is_tex(output)) {doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
doWithOneRestart(return(expr), restart) stop_on_error = if (is.numeric(options$error)) options$error else {36: withRestarts(with_handlers({doWithOneRestart(return(expr), restart) texi2pdf(file = output, clean = FALSE, quiet = quiet) if (options$error && options$include) output <- find_vignette_product(name, by = "texi2pdf", 0L
37: process_group(group)
for (expr in tle$exprs) {withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ else 2L
48: 37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
for (expr in tle$exprs) {
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, ev <- withVisible(eval(expr, envir))evaluate::evaluate(...) }, output_handler = knit_handlers(options$render, options))) engine = engine)evaluate::evaluate(...)
watcher$capture_plot_and_output()41: watcher$print_value(ev$value, ev$visible, envir) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { error = function(e) {44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { } if (options$error && options$include)
rlang::entrace(e) keep_message = if (is.numeric(options$message)) TRUE else options$message, 48: stop_on_error = if (is.numeric(options$error)) options$error else { stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) file, conditionMessage(e)))withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), }) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
}59: error = function(e) { } if (options$error && options$include) tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
TRUE 0L 0L
else 2L}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)43: }) if (progress && is.function(pb$interrupt))
else 2L
}, output_handler = knit_handlers(options$render, options))
}, output_handler = knit_handlers(options$render, options)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) {42: 40: evaluate::evaluate(...)
in_input_dir(evaluate(code, envir = env, new_device = FALSE, 41: in_dir(input_dir(), expr)
49:
evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, if (is_R_CMD_build() || is_R_CMD_check()) {42: in_dir(input_dir(), expr) keep_message = if (is.numeric(options$message)) TRUE else options$message, 43: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), in_input_dir(evaluate(code, envir = env, new_device = FALSE,
cnd = tryCatch(rlang::entrace(e), error = identity)43: keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, stop_on_error = if (is.numeric(options$error)) options$error else {in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params) keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, error <<- format(cnd) error = function(e) { keep_message = if (is.numeric(options$message)) TRUE else options$message, if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) if (options$error && options$include) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
keep_message = if (is.numeric(options$message)) TRUE else options$message, 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43:
in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
45: } stop_on_error = if (is.numeric(options$error)) options$error else { paste0("\nQuitting from ", loc, if (!is.null(error)) 46: 44: block_exec(params) else { if (options$error && options$include) rlang::entrace(e)eng_r(options)call_block(x)
} }
45: 46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {block_exec(params)
46: call_block(x)
47: process_group(group) }) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
if (progress && is.function(pb$interrupt))
48: pb$interrupt() paste0("\n", rule(), error, "\n", rule()))45: 49: if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity)
error <<- format(cnd)block_exec(params)}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } }46: } else { rlang::entrace(e) } error = function(e) {
if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) }50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
47: } }) })
54: 49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e)engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
} } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) }
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { }), function(loc) { paste0("\n", rule(), error, "\n", rule()))call_block(x)}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: if (progress && is.function(pb$interrupt)) vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({process_group(group)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49:
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
write_utf8(res, output %n% stdout()) engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) paste0("\nQuitting from ", loc, if (!is.null(error)) xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)tryCatch({54: engine$weave(file, quiet = quiet, encoding = enc)
55:
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } paste0("\n", rule(), error, "\n", rule()))}, error = function(e) {}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) output_dir = getwd(), ...) engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59:
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc)tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77314703a557.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from basic_usage.Rmd:82-91 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'basic_usage.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘basic_usage.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘convergence.Rmd’ using rmarkdown
--- finished re-building ‘convergence.Rmd’
--- re-building ‘data_formatting.Rmd’ using rmarkdown
--- finished re-building ‘data_formatting.Rmd’
--- re-building ‘interactions.Rmd’ using rmarkdown
--- finished re-building ‘interactions.Rmd’
--- re-building ‘mnl_models.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
30: eval(call)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() 8: system.time({ model <- mi$model watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
*** caught segfault ***
address 0x110, cause 'invalid permissions'
36: doWithOneRestart(return(expr), restart)
37:
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40:
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
evaluate::evaluate(...)
*** caught segfault ***
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28:
withVisible(eval(expr, envir))
29: 41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) {address 0x110, cause 'invalid permissions'
if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
}}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs) if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error))
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50:
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) }process_file(text, output)
Traceback:
1: else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: 51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3:
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
} if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else {
*** caught segfault ***
address 0x110, cause 'invalid permissions'
rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
Traceback:
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs) 1:
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } mi = mi, opts = mi$options) watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) {
*** caught segfault ***
address 0x110, cause 'invalid permissions'
invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
4:
46: call_block(x)
47: process_group(group)
doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) })
49: call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]]xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54:
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) {tryCatchList(expr, classes, parentenv, handlers) ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet)34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: 59: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,
Traceback:
keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler) else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options) 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { model <- mi$model cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() result <- NULL if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) setwd(wd) write_utf8(res, output %n% stdout()) }, error = function(e) { paste0("\nQuitting from ", loc, if (!is.null(error)) An irrecoverable exception occurred. R is aborting now ...
}) if (!is.null(result)) { model$fail <- FALSE paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$messageprocess_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", }})
9: FUN(X[[i]], ...)
TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) {
*** caught segfault ***
address 0x110, cause 'invalid permissions'
invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file7731165591b6.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from mnl_models.Rmd:85-98 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mnl_models.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘mnl_models.Rmd’
--- re-building ‘mnl_models_weighted.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output()
Traceback:
1: cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3:
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL
36: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)doWithOneRestart(return(expr), restart)
37: }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
Traceback:
1: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
10: lapply(X = S, FUN = FUN, ...)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 38: withRestartList(expr, restarts)
nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
39: mi = mi, opts = mi$options)
4: 7: 11: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, doTryCatch(return(expr), name, parentenv, handler)withRestarts(with_handlers({
5: for (expr in tle$exprs) {doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchOne(expr, names, parentenv, handlers[[1L]])tryCatchList(expr, classes, parentenv, handlers) ev <- withVisible(eval(expr, envir))
6: tryCatchList(expr, classes, parentenv, handlers)
7: watcher$capture_plot_and_output()
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) mi = mi, opts = mi$options) if (!is.null(call)) { watcher$print_value(ev$value, ev$visible, envir) } TRUE if (identical(call[[1L]], quote(doTryCatch))) }, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model
result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations40: }, error = function(e) {})
8: system.time({ model <- mi$modelevaluate::evaluate(...)
41: call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) model$status <- result$status w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { type = "b") model$message <- result$message } if (options$error && options$include) if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } }, error = function(e) { })}) if (!is.null(result)) { 0L
else 2L model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations }, output_handler = knit_handlers(options$render, options)) model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
9: invisible(structure(msg, class = "try-error", condition = e))10: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
42: in_dir(input_dir(), expr)lapply(X = S, FUN = FUN, ...)
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
11: 20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
11: 21: doTryCatch(return(expr), name, parentenv, handler)suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))43:
doTryCatch(return(expr), name, parentenv, handler)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 25:
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)
45: block_exec(params)
46: call_block(x)12:
47: process_group(group)
48: 29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd)tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { if (xfun::pkg_available("rlang", "1.0.0")) { prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") } if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) }tryCatch(expr, error = function(e) { w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) if (is.na(w)) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) else { w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], } type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE) else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) rlang::entrace(e)}, error = function (cnd) { watcher$capture_plot_and_output() } } })
cnd <- sanitize_call(cnd) .Internal(printDeferredWarnings())
49: 16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)FUN(X[[i]], ...) error = function(e) { if (progress && is.function(pb$interrupt)) })
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) {
18: 2: } invisible(structure(msg, class = "try-error", condition = e))})
15: if (is_R_CMD_build() || is_R_CMD_check()) {
try(lapply(X = S, FUN = FUN, ...), silent = TRUE)30: eval_f(x0, ...)
eval(call)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) cnd = tryCatch(rlang::entrace(e), error = identity)
error <<- format(cnd)
lapply(seq_len(cores), inner.do)
}16: 4: 31: else {
*** caught segfault ***
address 0x110, cause 'invalid permissions'
rlang::entrace(e)sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))eval(call) }19:
}parallel::mclapply(miList, runModel, mc.cores = numCores)32:
with_handlers({ }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout())
*** caught segfault ***
for (expr in tle$exprs) {20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: paste0("\nQuitting from ", loc, if (!is.null(error)) 17: ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) watcher$print_value(ev$value, ev$visible, envir)
address 0x110, cause 'invalid permissions'
} TRUE}, handlers) paste0("\n", rule(), error, "\n", rule()))doTryCatch(return(expr), name, parentenv, handler)
FUN(X[[i]], ...)
18: }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
lapply(seq_len(cores), inner.do)50: 22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)33:
doWithOneRestart(return(expr), restart) 5: suppressMessages(suppressWarnings(parallel::mclapply(miList,
runModel, mc.cores = numCores)))19: 52:
24: runMultistart(modelInputs)34: tryCatchOne(expr, names, parentenv, handlers[[1L]])rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), parallel::mclapply(miList, runModel, mc.cores = numCores)
output_dir = getwd(), ...)
6: 53: 25: vweave_rmarkdown(...)logitr(data = cars_us, outcome = "choice", obsID = "obsnum",
20: withOneRestart(expr, restarts[[1L]]) pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", 54: "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), tryCatchList(expr, classes, parentenv, handlers)withCallingHandlers(expr, warning = function(w) if (inherits(w,
7: engine$weave(file, quiet = quiet, encoding = enc)35:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
withRestartList(expr, restarts[-nr]) 2: tryCatch({
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 36: eval_f(x0, ...)
3:
*** caught segfault ***
classes)) tryInvokeRestart("muffleWarning"))nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, scalePar = "price", robust = TRUE, numMultiStarts = 10)
mi = mi, opts = mi$options)doWithOneRestart(return(expr), restart)
37: 26: 55:
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])doTryCatch(return(expr), name, parentenv, handler)
4:
21: doTryCatch(return(expr), name, parentenv, handler) mi = mi, opts = mi$options)
eval(expr, envir)38: address 0x110, cause 'invalid permissions'
withRestartList(expr, restarts)suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))}, error = function(e) {})
39: 56:
22:
withRestarts(with_handlers({
*** caught segfault ***
address 0x110, cause 'invalid permissions'
tryCatchOne(expr, names, parentenv, handlers[[1L]]) for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))
27: eval(expr, envir)
57:
Traceback:
tryCatchList(expr, classes, parentenv, handlers) 1: 8: 5: withCallingHandlers(expr, message = function(c) if (inherits(c, tryCatchOne(expr, names, parentenv, handlers[[1L]])system.time({ model <- mi$model watcher$capture_plot_and_output() result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
28: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) watcher$print_value(ev$value, ev$visible, envir) mi = mi, opts = mi$options)
classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)58: }, error = function(e) { 6: tryCatchList(expr, classes, parentenv, handlers)
}) }
25:
if (!is.null(result)) { TRUE 2: 7: withVisible(eval(expr, envir))}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) model$fail <- FALSEeval_f(x0, ...)
model$coefficients <- result$solution
model$logLik <- as.numeric(-1 * result$objective)tryCatch({
engine$weave(file, quiet = quiet, encoding = enc) 3: 40: model$iterations <- result$iterationstryCatch({logitr(data = cars_us, outcome = "choice", obsID = "obsnum", result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
*** caught segfault ***
model$status <- result$status mi = mi, opts = mi$options)}, error = function(e) {})
pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", setwd(startdir) model$message <- result$message } output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet)evaluate::evaluate(...)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
"bev150", "american", "japanese", "chinese", "skorean", 29: output <- find_vignette_product(name, by = "texi2pdf", address 0x110, cause 'invalid permissions'
4: })
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3:
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
8: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler) engine = engine)withCallingHandlers(code, message = function (cnd) "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), 14: system.time({
tryCatch(expr, error = function(e) {
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
}}, error = function(e) { scalePar = "price", robust = TRUE, numMultiStarts = 10)
OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")
An irrecoverable exception occurred. R is aborting now ...
{ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: 41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) call <- conditionCall(e)
doTryCatch(return(expr), name, parentenv, handler) 5: model <- mi$model 0L 3: result <- NULL26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) else 2Leval(call)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
{ tryCatch({ prefix <- paste("Error in", dcall, ": ") }, output_handler = knit_handlers(options$render, options))
mi = mi, opts = mi$options) 5: result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, if (getOption("warn") >= 2 || getOption("warn") < 0) { LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) return()
4: 32: mi = mi, opts = mi$options) } } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31:
Traceback:
doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message 1: }, error = function(e) { }) if (!is.null(result)) {
eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
tryCatchOne(expr, names, parentenv, handlers[[1L]])42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {tryCatchOne(expr, names, parentenv, handlers[[1L]]) invisible(structure(msg, class = "try-error", condition = e))mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) model$fail <- FALSEwith_handlers({ model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})})
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
})
8: 9: }FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
if (progress && is.function(pb$interrupt)) 13: tryCatchList(expr, classes, parentenv, handlers) for (expr in tle$exprs) {
35: system.time({ model <- mi$model pb$interrupt()17:
}) result <- NULL ev <- withVisible(eval(expr, envir)) if (xfun::pkg_available("rlang", "1.0.0")) {14: FUN(X[[i]], ...)
withRestartList(expr, restarts[-nr]) tryCatch({
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, tryCatch(expr, error = function(e) { if (is_R_CMD_build() || is_R_CMD_check()) {
6: mi = mi, opts = mi$options) call <- conditionCall(e) cnd = tryCatch(rlang::entrace(e), error = identity)36: 9: doWithOneRestart(return(expr), restart)
FUN(X[[i]], ...)18:
error <<- format(cnd) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: 8: tryCatchList(expr, classes, parentenv, handlers)withOneRestart(expr, restarts[[1L]]) }, error = function(e) { }10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: lapply(seq_len(cores), inner.do) else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) {system.time({ })37: tryCatchOne(expr, names, parentenv, handlers[[1L]]) cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) }
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) else { if (!is.null(call)) {19: if (!is.null(result)) {35:
rlang::entrace(e)38: parallel::mclapply(miList, runModel, mc.cores = numCores) 7: tryCatch({ if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, } model$fail <- FALSE mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { })withRestartList(expr, restarts[-nr]) model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts) } if (!is.null(result)) { model <- mi$model
withRestartList(expr, restarts)39:
result <- NULL20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: 9: }), function(loc) {
setwd(wd)
withCallingHandlers(code, message = function (cnd) model$fail <- FALSEwithRestarts(with_handlers({ model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler) for (expr in tle$exprs) { tryCatch({ ev <- withVisible(eval(expr, envir)){FUN(X[[i]], ...)13:
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, } watcher$capture_plot_and_output()39: watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: tryCatchList(expr, classes, parentenv, handlers)withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) mi = mi, opts = mi$options) invisible(structure(msg, class = "try-error", condition = e))evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, watcher$capture_plot_and_output()
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } call <- sys.call(-4L) keep_message = if (is.numeric(options$message)) TRUE else options$message, if (on_message$capture) { stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {
invisible(structure(msg, class = "try-error", condition = e)) dcall <- deparse(call, nlines = 1L) write_utf8(res, output %n% stdout()) watcher$push(cnd) }, error = function(e) {12: })}) paste0("\nQuitting from ", loc, if (!is.null(error))
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, 40: })tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) paste0("\n", rule(), error, "\n", rule())) if (options$error && options$include) evaluate::evaluate(...) classes)) tryInvokeRestart("muffleWarning")) if (!is.null(result)) {15: }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 0L w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
}try(lapply(X = S, FUN = FUN, ...), silent = TRUE) if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: prefix <- paste("Error in", dcall, ": ") else 2L model$fail <- FALSE21:
suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24:
eval(call) model$coefficients <- result$solution
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 41: }, output_handler = knit_handlers(options$render, options)))50: LONG <- 75L model$logLik <- as.numeric(-1 * result$objective) keep_message = if (is.numeric(options$message)) TRUE else options$message, model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() type = "b")evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,
sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], process_file(text, output)runMultistart(modelInputs)44: if (w > LONG) w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") keep_message = if (is.numeric(options$message)) TRUE else options$message,
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
prefix <- paste0(prefix, "\n ") if (is.na(w)) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
25: 57: 16: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine)15: if (xfun::pkg_available("rlang", "1.0.0")) {logitr(data = cars_us, outcome = "choice", obsID = "obsnum", eng_r(options) type = "b") } pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
}sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) else prefix <- "Error : "try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { if (is_R_CMD_build() || is_R_CMD_check()) {
if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)}, error = function(e) {})
cnd = tryCatch(rlang::entrace(e), error = identity)28: error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output) OK <<- FALSE }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", withVisible(eval(expr, envir))
29:
cat(msg, file = outFile)
if (progress && is.function(pb$interrupt))
pb$interrupt()
51: file, conditionMessage(e)))45: .Internal(printDeferredWarnings())withCallingHandlers(code, message = function (cnd) 26: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)})block_exec(params) if (xfun::pkg_available("rlang", "1.0.0")) {15: eval(expr, envir)
21:
{ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) {27: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
}
46: if (is_R_CMD_build() || is_R_CMD_check()) { invisible(structure(msg, class = "try-error", condition = e))52: eval(expr, envir)call_block(x)22: 59: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
cnd = tryCatch(rlang::entrace(e), error = identity)try(lapply(X = S, FUN = FUN, ...), silent = TRUE)})eval(expr, envir) invokeRestart("muffleMessage")28: error <<- format(cnd)
tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", } }withVisible(eval(expr, envir)) output_dir = getwd(), ...)15: }, warning = function (cnd) {
else {
16: if (getOption("warn") >= 2 || getOption("warn") < 0) {53: 47:
27: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))try(lapply(X = S, FUN = FUN, ...), silent = TRUE) TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) {
cnd <- sanitize_call(cnd)16:
An irrecoverable exception occurred. R is aborting now ...
rlang::entrace(e)vweave_rmarkdown(...)process_group(group)eval(expr, envir) watcher$push(cnd)
28: return()
withVisible(eval(expr, envir)) }
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() } }48: if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)17: 54: watcher$capture_plot_and_output()engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }
FUN(X[[i]], ...) if (on_message$capture) {
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
} })32: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), if (on_warning$capture) { watcher$push(cnd) cnd <- sanitize_call(cnd)27: with_handlers({sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))}, error = function(e) { } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call) OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
error = function(e) {17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: watcher$push(cnd) if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))
for (expr in tle$exprs) {eval(expr, envir) file, conditionMessage(e))) watcher$capture_plot_and_output() error <<- format(cnd) } else { rlang::entrace(e) } watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
ev <- withVisible(eval(expr, envir))
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") } watcher$capture_plot_and_output()49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)41:
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { }
withCallingHandlers(expr, message = function(c) if (inherits(c, 31: eval(call)}, error = function (cnd) cnd = tryCatch(rlang::entrace(e), error = identity) }), function(loc) { error <<- format(cnd) } else { rlang::entrace(e)evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, classes)) tryInvokeRestart("muffleMessage")) keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
{ setwd(wd)
write_utf8(res, output %n% stdout()) if (options$error && options$include) 28: 32: withVisible(eval(expr, envir))
paste0("\nQuitting from ", loc, if (!is.null(error)) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", }) file, conditionMessage(e)))})
}with_handlers({ } 0L59: watcher$capture_plot_and_output()
29: }) for (expr in tle$exprs) {withCallingHandlers(code, message = function (cnd)
paste0("\n", rule(), error, "\n", rule())) else 2L}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) }, output_handler = knit_handlers(options$render, options))){tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", cnd <- sanitize_call(cnd)49: ev <- withVisible(eval(expr, envir)) TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")
xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), watcher$capture_plot_and_output()
if (on_message$capture) { watcher$push(cnd)An irrecoverable exception occurred. R is aborting now ...
} if (on_message$silence) { invokeRestart("muffleMessage") }44: watcher$push(cnd)}, warning = function (cnd) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE59: switch(on_error, continue = invokeRestart("eval_continue"), eng_r(options)
}, handlers)tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", 45: stop = invokeRestart("eval_stop"), error = NULL){ TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds") error = function(e) { if (getOption("warn") >= 2 || getOption("warn") < 0) {block_exec(params)
return()
if (progress && is.function(pb$interrupt)) An irrecoverable exception occurred. R is aborting now ...
})
33: 53: doWithOneRestart(return(expr), restart)
34: 30: withOneRestart(expr, restarts[[1L]]) pb$interrupt() }
46: 35: if (xfun::pkg_available("rlang", "1.0.0")) {call_block(x)eval(call)vweave_rmarkdown(...)withRestartList(expr, restarts[-nr])
watcher$capture_plot_and_output()47:
if (on_warning$capture) {process_group(group)
54: if (is_R_CMD_build() || is_R_CMD_check()) {31: engine$weave(file, quiet = quiet, encoding = enc)36: cnd = tryCatch(rlang::entrace(e), error = identity) cnd <- sanitize_call(cnd)eval(call) error <<- format(cnd)
}55: watcher$push(cnd)doTryCatch(return(expr), name, parentenv, handler)doWithOneRestart(return(expr), restart)
else { } if (on_warning$silence) {56:
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])48: invokeRestart("muffleWarning") }withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
32: error = function(e) {tryCatchOne(expr, names, parentenv, handlers[[1L]]) rlang::entrace(e) if (progress && is.function(pb$interrupt)) }, error = function (cnd) with_handlers({
} for (expr in tle$exprs) { }38: }), function(loc) { ev <- withVisible(eval(expr, envir))
57: pb$interrupt()withRestartList(expr, restarts) setwd(wd){
write_utf8(res, output %n% stdout()) watcher$capture_plot_and_output() if (xfun::pkg_available("rlang", "1.0.0")) { watcher$capture_plot_and_output() if (is_R_CMD_build() || is_R_CMD_check()) { watcher$print_value(ev$value, ev$visible, envir) cnd = tryCatch(rlang::entrace(e), error = identity)tryCatchList(expr, classes, parentenv, handlers) }39:
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) TRUE paste0("\nQuitting from ", loc, if (!is.null(error)) output <- find_vignette_product(name, by = "weave", engine = engine)}, handlers)withRestarts(with_handlers({
33: doWithOneRestart(return(expr), restart)
34: if (!have.makefile && vignette_is_tex(output)) { paste0("\n", rule(), error, "\n", rule())) texi2pdf(file = output, clean = FALSE, quiet = quiet) cnd <- sanitize_call(cnd) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } error <<- format(cnd)withOneRestart(expr, restarts[[1L]])}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)}, error = function(e) { }
OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", for (expr in tle$exprs) {
else {50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
35: 52: file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", ev <- withVisible(eval(expr, envir)) watcher$push(cnd)withRestartList(expr, restarts[-nr]) TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds") rlang::entrace(e) watcher$capture_plot_and_output() } }
watcher$print_value(ev$value, ev$visible, envir)rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
36: })56: An irrecoverable exception occurred. R is aborting now ...
doWithOneRestart(return(expr), restart)
tryCatchOne(expr, names, parentenv, handlers[[1L]]) }37: switch(on_error, continue = invokeRestart("eval_continue"),
57: tryCatchList(expr, classes, parentenv, handlers)
58: stop = invokeRestart("eval_stop"), error = NULL)withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } TRUE})}, error = function(e) {}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
OK <<- FALSE
38: 49: 30: eval(call)
40: message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
31: eval(call) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt()evaluate::evaluate(...)
withRestartList(expr, restarts) if (xfun::pkg_available("rlang", "1.0.0")) {
if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) 39: 32: paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) {41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L OK <<- FALSEAn irrecoverable exception occurred. R is aborting now ...
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: with_handlers({withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } else 2L TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) }, output_handler = knit_handlers(options$render, options))) for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr",
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")
An irrecoverable exception occurred. R is aborting now ...
doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr]) if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: 56:
tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message,
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } else 2L }, output_handler = knit_handlers(options$render, options)) }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55:
59: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")
An irrecoverable exception occurred. R is aborting now ...
44: eng_r(options)
45: block_exec(params)
46: call_block(x)doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")
An irrecoverable exception occurred. R is aborting now ...
TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77316669050d.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from mnl_models_weighted.Rmd:64-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mnl_models_weighted.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘mnl_models_weighted.Rmd’
--- re-building ‘mxl_models.Rmd’ using rmarkdown
--- finished re-building ‘mxl_models.Rmd’
--- re-building ‘predict.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26:
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29:
withCallingHandlers(code, message = function (cnd) 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL{ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
{ if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd)11: switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
32: with_handlers({ for (expr in tle$exprs) {doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts) sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())
}39: withRestarts(with_handlers({ for (expr in tle$exprs) { invisible(structure(msg, class = "try-error", condition = e))})
*** caught segfault ***
address 0x110, cause 'invalid permissions'
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: }, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include)
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: 23: eval_f(x0, ...)suppressMessages(suppressWarnings(parallel::mclapply(miList,
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10) mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 0L else 2L }, output_handler = knit_handlers(options$render, options))
26: 42: eval(expr, envir)in_dir(input_dir(), expr)
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, 27: stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eval(expr, envir)
28: eng_r(options)withVisible(eval(expr, envir))
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) {
})
8: system.time({29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }) watcher$push(cnd)
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { } if (progress && is.function(pb$interrupt)) if (on_message$silence) { invokeRestart("muffleMessage")
Traceback:
model$coefficients <- result$solution 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: pb$interrupt() } if (xfun::pkg_available("rlang", "1.0.0")) {}, warning = function (cnd) if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd)eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
Traceback:
}{ model$logLik <- as.numeric(-1 * result$objective) else { 5: 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...) rlang::entrace(e) model$iterations <- result$iterations }tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
if (getOption("warn") >= 2 || getOption("warn") < 0) { model$status <- result$status } }), function(loc) { setwd(wd) 7: model$message <- result$messagetryCatch({ } return() } watcher$capture_plot_and_output() if (on_warning$capture) {
}) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
cnd <- sanitize_call(cnd) 4: watcher$push(cnd) } if (on_warning$silence) {doTryCatch(return(expr), name, parentenv, handler) invokeRestart("muffleWarning")
*** caught segfault ***
write_utf8(res, output %n% stdout())address 0x110, cause 'invalid permissions'
paste0("\nQuitting from ", loc, if (!is.null(error)) 9:
mi = mi, opts = mi$options) paste0("\n", rule(), error, "\n", rule()))FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
}11: doTryCatch(return(expr), name, parentenv, handler)}, error = function(e) {}, error = function (cnd) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
{51: 12: watcher$capture_plot_and_output()knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)tryCatchOne(expr, names, parentenv, handlers[[1L]])
})
8: system.time({ model <- mi$model result <- NULL cnd <- sanitize_call(cnd) tryCatch({ watcher$push(cnd)
52: 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) mi = mi, opts = mi$options) 6: tryCatchList(expr, classes, parentenv, handlers) switch(on_error, continue = invokeRestart("eval_continue"),
}, error = function(e) { stop = invokeRestart("eval_stop"), error = NULL)53: })vweave_rmarkdown(...)
})
30: eval(call)
13:
*** caught segfault ***
54: 31: address 0x110, cause 'invalid permissions'
engine$weave(file, quiet = quiet, encoding = enc)
if (!is.null(result)) {eval(call) model$fail <- FALSEtryCatchList(expr, classes, parentenv, handlers) 7:
tryCatch({55: model$coefficients <- result$solution
doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]]) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, model$logLik <- as.numeric(-1 * result$objective)32: model$iterations <- result$iterations mi = mi, opts = mi$options)
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine)14: with_handlers({tryCatch(expr, error = function(e) { if (!have.makefile && vignette_is_tex(output)) { model$status <- result$status}, error = function(e) { call <- conditionCall(e) texi2pdf(file = output, clean = FALSE, quiet = quiet)
Traceback:
if (!is.null(call)) { 1: model$message <- result$message for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) }})
9: FUN(X[[i]], ...)
10:
if (identical(call[[1L]], quote(doTryCatch))) }) 2: output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) {
*** caught segfault ***
lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: 33: address 0x110, cause 'invalid permissions'
OK <<- FALSEeval_f(x0, ...) call <- sys.call(-4L)tryCatchOne(expr, names, parentenv, handlers[[1L]])
doWithOneRestart(return(expr), restart) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", dcall <- deparse(call, nlines = 1L)
prefix <- paste("Error in", dcall, ": ")
3: 34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr]) LONG <- 75L
file, conditionMessage(e)))13: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 8:
tryCatchList(expr, classes, parentenv, handlers)
14: 36: doWithOneRestart(return(expr), restart)tryCatch(expr, error = function(e) { call <- conditionCall(e)})
if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) sm <- strsplit(conditionMessage(e), "\n")[[1L]]system.time({ prefix <- paste("Error in", dcall, ": ")59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
mi = mi, opts = mi$options) w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")An irrecoverable exception occurred. R is aborting now ...
LONG <- 75L
4: doTryCatch(return(expr), name, parentenv, handler)
if (is.na(w)) 37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts) 5: sm <- strsplit(conditionMessage(e), "\n")[[1L]]
tryCatchOne(expr, names, parentenv, handlers[[1L]])39: w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], model <- mi$model w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")withRestarts(with_handlers({ if (is.na(w)) type = "b") result <- NULL if (w > LONG) tryCatch({
prefix <- paste0(prefix, "\n ")
Traceback:
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
6: for (expr in tle$exprs) {tryCatchList(expr, classes, parentenv, handlers)
7: mi = mi, opts = mi$options) ev <- withVisible(eval(expr, envir))tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") } else prefix <- "Error : " watcher$capture_plot_and_output() if (w > LONG) watcher$print_value(ev$value, ev$visible, envir) 2: eval_f(x0, ...)
3: mi = mi, opts = mi$options) } }, error = function(e) {nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : "
msg <- paste0(prefix, conditionMessage(e), "\n") if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution
*** caught segfault ***
.Internal(seterrmessage(msg[1L])) model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations}, error = function(e) { model$status <- result$status 4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: model$message <- result$message if (!silent && isTRUE(getOption("show.error.messages"))) {address 0x110, cause 'invalid permissions'
msg <- paste0(prefix, conditionMessage(e), "\n")tryCatch({ cat(msg, file = outFile)}) TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
Traceback:
.Internal(seterrmessage(msg[1L])) } .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) if (!silent && isTRUE(getOption("show.error.messages"))) {})
cat(msg, file = outFile) .Internal(printDeferredWarnings())
result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 15: } mi = mi, opts = mi$options)}, error = function(e) {})
9: 42: 8: FUN(X[[i]], ...)in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { })
keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 1: 10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
keep_message = if (is.numeric(options$message)) TRUE else options$message, mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)system.time({ invisible(structure(msg, class = "try-error", condition = e))
model <- mi$model stop_on_error = if (is.numeric(options$error)) options$error else {
*** caught segfault ***
result <- NULL tryCatch({address 0x110, cause 'invalid permissions'
2: eval_f(x0, ...)
if (!is.null(result)) {12: tryCatchOne(expr, names, parentenv, handlers[[1L]])try(lapply(X = S, FUN = FUN, ...), silent = TRUE) if (options$error && options$include)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
model$fail <- FALSE
17: model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 13: 0L 3: tryCatchList(expr, classes, parentenv, handlers)
mi = mi, opts = mi$options) else 2L14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) model$status <- result$status }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
}, error = function(e) {FUN(X[[i]], ...)}) model$message <- result$message }})
45: w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], 9: }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status
Traceback:
type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ")
FUN(X[[i]], ...)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, model$message <- result$message }block_exec(params)
mi = mi, opts = mi$options) 1:
46: call_block(x)
47: else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
process_group(group)15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
18:
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)10:
2: eval_f(x0, ...)16: 16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19:
4: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: }17: FUN(X[[i]], ...)lapply(X = S, FUN = FUN, ...)
Traceback:
doTryCatch(return(expr), name, parentenv, handler)withCallingHandlers(code, message = function (cnd) parallel::mclapply(miList, runModel, mc.cores = numCores)
3:
{
})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2:
watcher$capture_plot_and_output() 5: if (on_message$capture) { LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") }nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)48: tryCatchOne(expr, names, parentenv, handlers[[1L]])18:
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
lapply(seq_len(cores), inner.do) else prefix <- "Error : "20: mi = mi, opts = mi$options)eval_f(x0, ...)11: watcher$push(cnd)withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), withCallingHandlers(expr, warning = function(w) if (inherits(w, error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) }
doTryCatch(return(expr), name, parentenv, handler) 3: else {}, error = function(e) {19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: msg <- paste0(prefix, conditionMessage(e), "\n") rlang::entrace(e)}) 4: }logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat",
classes)) tryInvokeRestart("muffleWarning"))doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
"brand"), scalePar = "price", numMultiStarts = 10)12: }
26: 21: } }) if (on_message$silence) { .Internal(seterrmessage(msg[1L]))tryCatchOne(expr, names, parentenv, handlers[[1L]])
suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", if (!silent && isTRUE(getOption("show.error.messages"))) { 8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) cat(msg, file = outFile) if (!is.null(result)) { invokeRestart("muffleMessage") "brand"), scalePar = "price", numMultiStarts = 10) 7:
} model$fail <- FALSE .Internal(printDeferredWarnings())tryCatch({ mi = mi, opts = mi$options)eval(expr, envir)}, warning = function (cnd) model$coefficients <- result$solution }13:
model$logLik <- as.numeric(-1 * result$objective) invisible(structure(msg, class = "try-error", condition = e)) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, {27: tryCatchList(expr, classes, parentenv, handlers)eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }})49:
if (getOption("warn") >= 2 || getOption("warn") < 0) { 4: doTryCatch(return(expr), name, parentenv, handler)
mi = mi, opts = mi$options) model$iterations <- result$iterations
5: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) model$status <- result$status}, warning = function (cnd) 15: 14: error <<- format(cnd) model$message <- result$messagetry(lapply(X = S, FUN = FUN, ...), silent = TRUE)}, error = function(e) {})
{tryCatch(expr, error = function(e) { } }})
8: tryCatchOne(expr, names, parentenv, handlers[[1L]]) else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) call <- conditionCall(e) 9: system.time({ return()26:
}FUN(X[[i]], ...)16: if (getOption("warn") >= 2 || getOption("warn") < 0) {sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
eval(expr, envir) model <- mi$model
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { result <- NULL17: return() tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { } watcher$capture_plot_and_output() return() call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") }
6: tryCatchList(expr, classes, parentenv, handlers)
if (on_warning$capture) { mi = mi, opts = mi$options) cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") watcher$capture_plot_and_output() 7: FUN(X[[i]], ...) if (!is.null(call)) {
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
} if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ")}, error = function (cnd)
}, error = function(e) { } }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective)tryCatch({ else prefix <- "Error : " else prefix <- "Error : " if (on_warning$capture) { msg <- paste0(prefix, conditionMessage(e), "\n"){ } msg <- paste0(prefix, conditionMessage(e), "\n") watcher$capture_plot_and_output() .Internal(seterrmessage(msg[1L])) cnd <- sanitize_call(cnd) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, watcher$push(cnd)18: watcher$capture_plot_and_output()57: } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), mi = mi, opts = mi$options) if (!silent && isTRUE(getOption("show.error.messages"))) {withRestartList(expr, restarts)
39: withRestarts(with_handlers({ stop = invokeRestart("eval_stop"), error = NULL) .Internal(seterrmessage(msg[1L])) model$iterations <- result$iterations}, error = function(e) { model$status <- result$status model$message <- result$message }}) cat(msg, file = outFile) for (expr in tle$exprs) {lapply(seq_len(cores), inner.do) if (!silent && isTRUE(getOption("show.error.messages"))) {
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)}) if (on_warning$capture) {
cnd <- sanitize_call(cnd)}) .Internal(printDeferredWarnings())tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) 9:
19: ev <- withVisible(eval(expr, envir))FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)parallel::mclapply(miList, runModel, mc.cores = numCores)
20: 30: watcher$push(cnd)
setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
8: system.time({ watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, withCallingHandlers(expr, warning = function(w) if (inherits(w, keep_message = if (is.numeric(options$message)) TRUE else options$message, eval(call) }13:
classes)) tryInvokeRestart("muffleWarning")) stop_on_error = if (is.numeric(options$error)) options$error else { } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { if (options$error && options$include) 27:
tryCatchList(expr, classes, parentenv, handlers) invisible(structure(msg, class = "try-error", condition = e))
0L ev <- withVisible(eval(expr, envir))21: model <- mi$modelsuppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))31:
})eval(expr, envir) result <- NULL
eval(call) watcher$capture_plot_and_output() else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
15:
32: with_handlers({ tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { })
44: try(lapply(X = S, FUN = FUN, ...), silent = TRUE) watcher$print_value(ev$value, ev$visible, envir) if (!is.null(result)) {28: withVisible(eval(expr, envir)) model$fail <- FALSE
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: 22: for (expr in tle$exprs) { }14: FUN(X[[i]], ...) model$coefficients <- result$solutionwithCallingHandlers(expr, message = function(c) if (inherits(c, eng_r(options) TRUE
ev <- withVisible(eval(expr, envir)) model$logLik <- as.numeric(-1 * result$objective) classes)) tryInvokeRestart("muffleMessage"))
}, handlers)45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) {
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
29: 38: model$iterations <- result$iterations23: tryCatch(expr, error = function(e) { watcher$capture_plot_and_output() model$status <- result$status18: lapply(seq_len(cores), inner.do)
watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: withCallingHandlers(code, message = function (cnd) suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: 49: 19: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, model$message <- result$messagelogitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat",
xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), { call <- conditionCall(e) } "brand"), scalePar = "price", numMultiStarts = 10)33: error = function(e) { watcher$capture_plot_and_output() if (on_message$capture) { if (!is.null(call)) {parallel::mclapply(miList, runModel, mc.cores = numCores) if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) }
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
watcher$push(cnd)doWithOneRestart(return(expr), restart) keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) invisible(structure(msg, class = "try-error", condition = e)) if (progress && is.function(pb$interrupt)) })
}) pb$interrupt()27: 26: }45:
if (xfun::pkg_available("rlang", "1.0.0")) { 9: if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout())eval(expr, envir) watcher$capture_plot_and_output()eval(expr, envir)15:
28: try(lapply(X = S, FUN = FUN, ...), silent = TRUE) if (on_message$silence) {
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, watcher$print_value(ev$value, ev$visible, envir) invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) {block_exec(params)FUN(X[[i]], ...) classes)) tryInvokeRestart("muffleWarning"))
withVisible(eval(expr, envir)) invokeRestart("muffleWarning")
}}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) {29: } }46: paste0("\nQuitting from ", loc, if (!is.null(error)) cnd <- sanitize_call(cnd)withCallingHandlers(code, message = function (cnd) TRUE10: paste0("\n", rule(), error, "\n", rule()))21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: TRUEcall_block(x)}, handlers)withCallingHandlers(expr, message = function(c) if (inherits(c, watcher$push(cnd)
}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) classes)) tryInvokeRestart("muffleMessage"))
33: doWithOneRestart(return(expr), restart)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE){23: 34: 47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
lapply(X = S, FUN = FUN, ...) watcher$capture_plot_and_output()withOneRestart(expr, restarts[[1L]]) if (progress && is.function(pb$interrupt)) } pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } if (on_message$capture) {
if (on_warning$silence) { else { rlang::entrace(e) } } }), function(loc) { setwd(wd) watcher$push(cnd) invokeRestart("muffleWarning")40: evaluate::evaluate(...)
41: write_utf8(res, output %n% stdout())
}evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, suppressMessages(suppressWarnings(parallel::mclapply(miList,
if (on_message$silence) { invokeRestart("muffleMessage")11: paste0("\nQuitting from ", loc, if (!is.null(error)) runModel, mc.cores = numCores))) stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: doTryCatch(return(expr), name, parentenv, handler)
12: 52: }in_dir(input_dir(), expr) paste0("\n", rule(), error, "\n", rule()))rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), }tryCatchOne(expr, names, parentenv, handlers[[1L]])}, warning = function (cnd)
}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)}, error = function (cnd) 35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
{ if (getOption("warn") >= 2 || getOption("warn") < 0) {42:
{43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, 24: watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }13: return()
output_dir = getwd(), ...)runMultistart(modelInputs)
stop_on_error = if (is.numeric(options$error)) options$error else { }50: in_dir(input_dir(), expr)process_file(text, output)tryCatchList(expr, classes, parentenv, handlers)
if (options$error && options$include) 53:
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler) 0L watcher$capture_plot_and_output()25: if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning")14: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
43: TRUEin_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: }, handlers) else 2L56: }, output_handler = knit_handlers(options$render, options)))
44: }vweave_rmarkdown(...)
eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity)tryCatchOne(expr, names, parentenv, handlers[[1L]])process_group(group)
33: error <<- format(cnd)}, error = function (cnd)
tryCatch(expr, error = function(e) { }26: {
doWithOneRestart(return(expr), restart)eval(expr, envir)54: 48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) {
cnd = tryCatch(rlang::entrace(e), error = identity) watcher$capture_plot_and_output()engine$weave(file, quiet = quiet, encoding = enc) else {
57: error <<- format(cnd)34: call <- conditionCall(e)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { rlang::entrace(e) } cnd <- sanitize_call(cnd)57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({withOneRestart(expr, restarts[[1L]]) texi2pdf(file = output, clean = FALSE, quiet = quiet) }27: watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir)eval(expr, envir) engine$weave(file, quiet = quiet, encoding = enc) else { for (expr in tle$exprs) { rlang::entrace(e) } } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { output <- find_vignette_product(name, by = "texi2pdf", setwd(startdir) }
if (progress && is.function(pb$interrupt)) 28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)}) output <- find_vignette_product(name, by = "weave", engine = engine) TRUE }), function(loc) {}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L pb$interrupt() ev <- withVisible(eval(expr, envir)) if (!have.makefile && vignette_is_tex(output)) { if (!is.null(call)) { setwd(wd)
if (xfun::pkg_available("rlang", "1.0.0")) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") if (is_R_CMD_build() || is_R_CMD_check()) {30: }, output_handler = knit_handlers(options$render, options))) write_utf8(res, output %n% stdout()) texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { .Internal(seterrmessage(msg[1L])) engine = engine) } if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) OK <<- FALSE paste0("\nQuitting from ", loc, if (!is.null(error)) cnd = tryCatch(rlang::entrace(e), error = identity) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart) error <<- format(cnd)eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: 34: doWithOneRestart(return(expr), restart)
34:
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", withOneRestart(expr, restarts[[1L]]) } paste0("\n", rule(), error, "\n", rule()))44: }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: }, error = function(e) { file, conditionMessage(e)))withOneRestart(expr, restarts[[1L]])})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
doTryCatch(return(expr), name, parentenv, handler)15:
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: eng_r(options) else {
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) }
try(lapply(X = S, FUN = FUN, ...), silent = TRUE)35: withRestartList(expr, restarts[-nr])
evaluate::evaluate(...) else {
41: OK <<- FALSE rlang::entrace(e) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: rlang::entrace(e)
evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
}56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
} })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) }57:
16: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", } } }), function(loc) { setwd(wd) } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43:
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
keep_message = if (is.numeric(options$message)) TRUE else options$message, output_dir = getwd(), ...)tryCatchList(expr, classes, parentenv, handlers) TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")in_input_dir(evaluate(code, envir = env, new_device = FALSE, 25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output()
0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e)57: stop_on_error = if (is.numeric(options$error)) options$error else { if (on_warning$capture) {
58: An irrecoverable exception occurred. R is aborting now ...
tryCatchList(expr, classes, parentenv, handlers)tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
58: tryCatch({ cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ if (options$error && options$include) for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options) engine$weave(file, quiet = quiet, encoding = enc)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } setwd(startdir) } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule())) }}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
} })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd)56: 36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])tryCatchOne(expr, names, parentenv, handlers[[1L]]) write_utf8(res, output %n% stdout())
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
output <- find_vignette_product(name, by = "weave", engine = engine) paste0("\nQuitting from ", loc, if (!is.null(error))
if (!have.makefile && vignette_is_tex(output)) { paste0("\n", rule(), error, "\n", rule())) texi2pdf(file = output, clean = FALSE, quiet = quiet)53: 38: vweave_rmarkdown(...)}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43:
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e))) texi2pdf(file = output, clean = FALSE, quiet = quiet)52: in_input_dir(evaluate(code, envir = env, new_device = FALSE, rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: output <- find_vignette_product(name, by = "texi2pdf", engine = engine)tryCatchList(expr, classes, parentenv, handlers) keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, })
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
}}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
49: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
50: process_file(text, output)
51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
53: vweave_rmarkdown(...)
54: engine$weave(file, quiet = quiet, encoding = enc)
55: doTryCatch(return(expr), name, parentenv, handler)
56: tryCatchOne(expr, names, parentenv, handlers[[1L]])
57: tryCatchList(expr, classes, parentenv, handlers)
58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
59: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmpOG3D5U/file77311113793a.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from predict.Rmd:91-109 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predict.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘predict.Rmd’
--- re-building ‘summarizing_results.Rmd’ using rmarkdown
--- finished re-building ‘summarizing_results.Rmd’
--- re-building ‘utility_models.Rmd’ using rmarkdown
--- finished re-building ‘utility_models.Rmd’
SUMMARY: processing the following files failed:
‘basic_usage.Rmd’ ‘mnl_models.Rmd’ ‘mnl_models_weighted.Rmd’
‘predict.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64