Last updated on 2025-04-03 09:56:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9 | 2.06 | 33.67 | 35.73 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9 | 1.45 | 34.28 | 35.73 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9 | 78.68 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9 | 91.55 | ERROR | |||
| r-devel-macos-arm64 | 0.9 | 45.00 | ERROR | |||
| r-devel-macos-x86_64 | 0.9 | 74.00 | OK | |||
| r-devel-windows-x86_64 | 0.9 | 4.00 | 62.00 | 66.00 | ERROR | |
| r-patched-linux-x86_64 | 0.9 | 2.09 | 45.85 | 47.94 | OK | |
| r-release-linux-x86_64 | 0.9 | 1.76 | 42.28 | 44.04 | OK | |
| r-release-macos-arm64 | 0.9 | 35.00 | OK | |||
| r-release-macos-x86_64 | 0.9 | 49.00 | OK | |||
| r-release-windows-x86_64 | 0.9 | 4.00 | 134.00 | 138.00 | OK | |
| r-oldrel-macos-arm64 | 0.9 | ERROR | ||||
| r-oldrel-macos-x86_64 | 0.9 | 43.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.9 | 4.00 | 139.00 | 143.00 | OK |
Version: 0.9
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 0 file(s)
NA
HTTP 404 Not Found.File stored at:
/tmp/Rtmp6kGPft/NA
Error in downloadFile(url, destfile = destfile, mode = "wb") :
Failed to download /tmp/Rtmp6kGPft/NA!
Calls: getGeneExpressionFromGEO ... <Anonymous> -> getAndParseGSEMatrices -> downloadFile
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘R.utils’ ‘markdown’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.9
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 1 file(s)
GSE3268_series_matrix.txt.gz
HTTP 403 Forbidden.File stored at:
/tmp/RtmpqGsEBA/working_dir/RtmpFQBlyk/GSE3268_series_matrix.txt.gz
Error in downloadFile(url, destfile = destfile, mode = "wb") :
Failed to download /tmp/RtmpqGsEBA/working_dir/RtmpFQBlyk/GSE3268_series_matrix.txt.gz!
Calls: getGeneExpressionFromGEO ... <Anonymous> -> getAndParseGSEMatrices -> downloadFile
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.9
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Error in open.connection(x, "rb") : cannot open the connection
Calls: getGeneExpressionFromGEO ... getAndParseGSEMatrices -> getDirListing -> <Anonymous> -> read_html.default
Execution halted
Flavor: r-devel-macos-arm64
Version: 0.9
Check: examples
Result: ERROR
Running examples in 'geneExpressionFromGEO-Ex.R' failed
The error most likely occurred in:
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 0 file(s)
NA
HTTP 404 Not Found.File stored at:
D:\temp\2025_04_01_01_50_00_15887\RtmpEVARyT/NA
Error in downloadFile(url, destfile = destfile, mode = "wb") :
Failed to download D:\temp\2025_04_01_01_50_00_15887\RtmpEVARyT/NA!
Calls: getGeneExpressionFromGEO ... <Anonymous> -> getAndParseGSEMatrices -> downloadFile
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.9
Check: package dependencies
Result: ERROR
Package required but not available: ‘GEOquery’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64