Last updated on 2024-12-01 09:48:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 5.86 | 73.72 | 79.58 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 3.87 | 53.65 | 57.52 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 134.90 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 185.09 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 9.00 | 105.00 | 114.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 5.29 | 71.90 | 77.19 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 5.47 | 71.72 | 77.19 | OK | |
| r-release-macos-arm64 | 1.0.2 | 48.00 | OK | |||
| r-release-macos-x86_64 | 1.0.2 | 81.00 | OK | |||
| r-release-windows-x86_64 | 1.0.2 | 8.00 | 89.00 | 97.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 46.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.2 | 79.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 10.00 | 109.00 | 119.00 | OK |
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eudract)
>
> test_check("eudract")
[ FAIL 1 | WARN 4 | SKIP 9 | PASS 78 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• Need to have the userid/password as environment variables (4):
'test_basic.R:305:61', 'test_basic.R:324:61', 'test_basic.R:343:61',
'test_errors.R:191:71'
• On CRAN (5): 'test_dotplot.R:38:3', 'test_dotplot.R:53:3',
'test_dotplot.R:82:3', 'test_dotplot.R:119:1', 'test_dotplot.R:129:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_basic.R:373:3'): print the safety summary ──────────────────────
Error in `options(scipen = old_scipen)`: invalid 'scipen'
Backtrace:
▆
1. ├─testthat::capture_output_lines(print(safety_statistics)) at test_basic.R:373:3
2. │ └─testthat:::eval_with_output(code, print = print, width = width)
3. │ ├─withr::with_output_sink(path, withVisible(code))
4. │ │ └─base::force(code)
5. │ └─base::withVisible(code)
6. ├─base::print(safety_statistics)
7. └─eudract:::print.safety_summary(safety_statistics)
8. └─base::options(scipen = old_scipen)
[ FAIL 1 | WARN 4 | SKIP 9 | PASS 78 ]
Deleting unused snapshots:
• dotplot/dotplot-ref-rr.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘eudract.Rmd’ using rmarkdown
Quitting from lines 56-62 [counting] (eudract.Rmd)
Error: processing vignette 'eudract.Rmd' failed with diagnostics:
invalid 'scipen'
--- failed re-building ‘eudract.Rmd’
--- re-building ‘standard_reporting.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/eudract.Rcheck/vign_test/eudract/vignettes/standard_reporting_files/figure-html/dotplot_sae-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26235 bytes
Input file size = 26349 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21508
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21508
Output IDAT size = 21508 bytes (4727 bytes decrease)
Output file size = 21586 bytes (4763 bytes = 18.08% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/eudract.Rcheck/vign_test/eudract/vignettes/standard_reporting_files/figure-html/dotplot_ae-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26432 bytes
Input file size = 26546 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21246
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21246
Output IDAT size = 21246 bytes (5186 bytes decrease)
Output file size = 21324 bytes (5222 bytes = 19.67% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/eudract.Rcheck/vign_test/eudract/vignettes/standard_reporting_files/figure-html/dotplot_edit-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28738 bytes
Input file size = 28852 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22882
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22882
Output IDAT size = 22882 bytes (5856 bytes decrease)
Output file size = 22960 bytes (5892 bytes = 20.42% decrease)
--- finished re-building ‘standard_reporting.Rmd’
SUMMARY: processing the following file failed:
‘eudract.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang