Last updated on 2025-03-01 09:51:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 26.46 | 265.49 | 291.95 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 21.46 | 197.87 | 219.33 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 450.29 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 424.56 | ERROR | |||
| r-devel-macos-arm64 | 0.1.0 | 120.00 | OK | |||
| r-devel-macos-x86_64 | 0.1.0 | 235.00 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 27.00 | 227.00 | 254.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 24.26 | 246.33 | 270.59 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 24.60 | 244.50 | 269.10 | OK | |
| r-release-macos-arm64 | 0.1.0 | 119.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 189.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 26.00 | 224.00 | 250.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 224.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 36.00 | 309.00 | 345.00 | OK |
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘MASS’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘FREEtree-Ex.R’ failed
The error most likely occurred in:
> ### Name: FREEtree
> ### Title: Initial FREEtree call which then calls actual FREEtree methods
> ### depending on parameters being passed through.
> ### Aliases: FREEtree
>
> ### ** Examples
>
> #locate example data file
> dataf <- system.file("data/data.RData", package="FREEtree")
> mytree = FREEtree(data,fixed_regress=c("time","time2"), fixed_split=c("treatment"),
+ var_select=paste("V",1:200,sep=""), minModuleSize = 5,
+ cluster="patient", Fuzzy=TRUE, maxdepth_factor_select = 0.5,
+ maxdepth_factor_screen = 0.04, minsize_multiplier = 5,
+ alpha_screen = 0.2, alpha_select=0.2,alpha_predict=0.05)
Use FREEtree_time
Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower, :
convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
unable to evaluate scaled gradient
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge: degenerate Hessian with 1 negative eigenvalues
Error in if (continue & (abs(newloglik - oldloglik[2]) < abstol)) { :
missing value where TRUE/FALSE needed
Calls: FREEtree -> FREEtree_time -> lmertree
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [45s/71s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(FREEtree)
>
> test_check("FREEtree")
[ FAIL 2 | WARN 4 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_FREEtree.R:113:3'): FREEtree_time a5 estimation ────────────────
Error in `if (continue & (abs(newloglik - oldloglik[2]) < abstol)) {
if (newloglik > oldloglik[1])
continue <- FALSE
}`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─FREEtree::FREEtree(...) at test_FREEtree.R:113:3
2. └─FREEtree:::FREEtree_time(...)
3. └─glmertree::lmertree(...)
── Error ('test_FREEtree.R:230:3'): FREEtree_PC a0 estimation ──────────────────
Error in `if (continue & (abs(newloglik - oldloglik[2]) < abstol)) {
if (newloglik > oldloglik[1])
continue <- FALSE
}`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─FREEtree::FREEtree(...) at test_FREEtree.R:230:3
2. └─FREEtree:::FREEtree_PC(...)
3. └─glmertree::lmertree(...)
[ FAIL 2 | WARN 4 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [45s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(FREEtree)
>
> test_check("FREEtree")
[ FAIL 2 | WARN 4 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_FREEtree.R:113:3'): FREEtree_time a5 estimation ────────────────
Error in `if (continue & (abs(newloglik - oldloglik[2]) < abstol)) {
if (newloglik > oldloglik[1])
continue <- FALSE
}`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─FREEtree::FREEtree(...) at test_FREEtree.R:113:3
2. └─FREEtree:::FREEtree_time(...)
3. └─glmertree::lmertree(...)
── Error ('test_FREEtree.R:230:3'): FREEtree_PC a0 estimation ──────────────────
Error in `if (continue & (abs(newloglik - oldloglik[2]) < abstol)) {
if (newloglik > oldloglik[1])
continue <- FALSE
}`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─FREEtree::FREEtree(...) at test_FREEtree.R:230:3
2. └─FREEtree:::FREEtree_PC(...)
3. └─glmertree::lmertree(...)
[ FAIL 2 | WARN 4 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc