89fe32b7dba2fe416c6c2db4b64c2b78 *DESCRIPTION
794824a4296f177f93d2303702a903bf *NAMESPACE
e1005857f275fd053cb62adff949de52 *R/Coxmos_common_functions.R
ec95209c8979154a152961b4698e2612 *R/Coxmos_cox.R
eb03a2f661bb4247316b9816642ac570 *R/Coxmos_coxEN.R
2f1134c390574d54664e2fd6f70f9c3d *R/Coxmos_coxSW.R
63dbd78c7aa664b4bf364b9cacb181ff *R/Coxmos_coxmos.R
cbccca1c98c41a4dc4a5cf5ccf156f10 *R/Coxmos_dependency_functions.R
1a117b43921421115d6fe8c381a8997e *R/Coxmos_evaluation_functions.R
d3fa714e7cacb022d6dc0a096d0ca7a3 *R/Coxmos_isb_splsdacox_dynamic.R
f4ab41c448519491f80f808b8f228f2a *R/Coxmos_isb_splsdrcox.R
47a790082885f83139ab5c22c465d308 *R/Coxmos_isb_splsdrcox_dynamic.R
2350a99923a8ae9830a6870119610154 *R/Coxmos_isb_splsicox.R
cf2ca660a3ba116c46ea286c3a152a74 *R/Coxmos_mb_coxmos.R
4764ae567e4698f3f87b6d2afd465924 *R/Coxmos_mb_splsdacox_dynamic.R
5d02f542edb739c6ea2197d89c82d654 *R/Coxmos_mb_splsdrcox_dynamic.R
deab7bb59a66a1c0c940b55759de0ba9 *R/Coxmos_multiblock_functions.R
2453d3a9fec1edb1d26d099b4a04b1b7 *R/Coxmos_plot_functions.R
56ea0bf6a23c2d3f3064447eba7e5843 *R/Coxmos_plot_functions_others.R
d03717f5cc15d99addec1f162eb098a9 *R/Coxmos_sb_splsdacox_dynamic.R
9c7564426c815b5d46a329f9ed673a72 *R/Coxmos_sb_splsdrcox.R
fd2f329ddcea28c0a9dc34acac4f7453 *R/Coxmos_sb_splsdrcox_dynamic.R
af95bfd323aa28b3778ea57847785ef2 *R/Coxmos_sb_splsicox.R
d7f53ccc65b600d01c1d3c2920994f1d *R/Coxmos_splsdacox_dynamic.R
89f8814b66e2a4461e11f0b96757149e *R/Coxmos_splsdrcox.R
e1c530728a097f6e4a631500bd61267b *R/Coxmos_splsdrcox_dynamic.R
543210a5bc0b6284e7296c55fe000cce *R/Coxmos_splsdrcox_median.R
385a4f65cf27df692cb819d794a8ab84 *R/Coxmos_splsicox.R
8537df4a939633d4449ab7e873a6c69b *R/cenROC.R
9dc82df9e7c900d29086360d2fb923f6 *R/condSURV.R
055fb348509e00ba0cd3ecff3de4c5a0 *R/data.R
b2e6c42645c57336cbdd006dc9f491df *README.md
c33a773ba75dc1c633b65d4f42f385d9 *build/partial.rdb
4c074688541e4423efd8e08431ae0346 *build/vignette.rds
f71583d5e9eef06e0ffde1ddcbb35d0d *data/X_multiomic.rda
5c419f7651a7b89d113c827b267d809d *data/X_proteomic.rda
581d46d527ae505cb9f347b7fa5a076d *data/Y_multiomic.rda
2cbe93c3159b0eed9b38e3d214bb12b9 *data/Y_proteomic.rda
56aa49b658d720ab5af81f2aa55118b6 *inst/REFERENCES.bib
9d69181fec32ca506b483acdf511239c *inst/doc/Coxmos-MO-pipeline.R
10a3ab2c35f4bb2013dab150726462a6 *inst/doc/Coxmos-MO-pipeline.Rmd
a62767c6dd6bafbe850464098ea2c11f *inst/doc/Coxmos-MO-pipeline.html
d7800282331c5b1871e8e14fdc938022 *inst/doc/Coxmos-pipeline.R
56b46ed195fecd8b853d38b753c91fee *inst/doc/Coxmos-pipeline.Rmd
f4f14dcb9911912cb177e28b01cf8230 *inst/doc/Coxmos-pipeline.html
8072cc33651ac3572ba0f43e09ee6baf *man/Beran.Rd
3953bcfe2d7d202c17cce44f8552d5e7 *man/CV.Rd
67e4eb5eba4b9ee570959097fe22efae *man/Csurv.Rd
500b0bb0edeecd147c9749f845478a05 *man/NR.Rd
4d4070de13c05aa3556ab39002916ce3 *man/PI.Rd
9603db8a6d3f7ad6068bdf059d5c1f46 *man/RocFun.Rd
0621ba681bc66ff3ebe57f1b32f149c4 *man/X_multiomic.Rd
cebfaac3faf680c2b28880f3693dfae0 *man/X_proteomic.Rd
23142301456b73bb54326a34f23b3d00 *man/Y_multiomic.Rd
6227582b12f04e925a329eb1a2025251 *man/Y_proteomic.Rd
e6c29b10bfd000be19a4b6494d3c4561 *man/cenROC.Rd
e5f9e9e88e65a40cf14ed97829ce9d0d *man/cox.Rd
ea4066f02f32130b28894a16bb9e86b0 *man/cox.prediction.Rd
52a5b7f6c959921f8133d10943b3fa1b *man/coxEN.Rd
aaee74e0300723f21e2e9402e14223d0 *man/coxSW.Rd
0477a22e64dc4e1dfb556632d9292a6f *man/coxmos.Rd
6a3b022f26b3eddcea39c4d13aef9502 *man/cv.coxEN.Rd
3ce5ddb3b7ca9de7ca92f19e42f900ca *man/cv.coxmos.Rd
0a68224212b88d6ec9cbadc90f34b518 *man/cv.isb.splsdacox.Rd
21a26f8994f3de5447a01c3545fea2cc *man/cv.isb.splsdrcox.Rd
8f71b2ef2f0df3d19e155ebccebaf7c2 *man/cv.isb.splsdrcox_penalty.Rd
69361a2276e45a15960f64470d585e18 *man/cv.isb.splsicox.Rd
91fb9d405f1ec8a0f37b4351396d4aab *man/cv.mb.coxmos.Rd
d68690846bc47af7780efdda74110368 *man/cv.mb.splsdacox.Rd
1ea3d013cc5f445400cc9a565e1819f1 *man/cv.mb.splsdrcox.Rd
fa49249d21d5126b6ca2c246a3fddfce *man/cv.sb.splsdacox.Rd
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055777897024b1f67a35477918d20fc8 *man/cv.sb.splsdrcox_penalty.Rd
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01a859b77ab059e80f75705bd5645df4 *man/cv.splsdacox.Rd
8c7873ada361576ce0c84c17f04372c4 *man/cv.splsdrcox.Rd
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b0dd7c670ea6e6715424c33c8f9844ca *man/cv.splsicox.Rd
f9295de1f297ef9b16f1e86d81808f5d *man/deleteNearZeroCoefficientOfVariation.Rd
ee45e79f01494a4fe4f9d4c84b8305e6 *man/deleteNearZeroCoefficientOfVariation.mb.Rd
200b9c886ccee1f3572dc734c9a44e3f *man/deleteZeroOrNearZeroVariance.Rd
5d11c001a2865fbf9ca50fa52e8d559c *man/deleteZeroOrNearZeroVariance.mb.Rd
743aa67344235113cb21663f1e9b6e3d *man/dnorkernel.Rd
f58d621d9ad1a9ee5bc7cdd4b2c29242 *man/eval_Coxmos_model_per_variable.Rd
027c5665995090b3d5bc36ab83797d54 *man/eval_Coxmos_model_per_variable.list.Rd
2a3b174d66781e7f84b7f9cbbe1bda5d *man/eval_Coxmos_models.Rd
54cbd0a422a5f1e8cc1dd2bf7e887012 *man/factorToBinary.Rd
9eb6752ba902680ba940179361860466 *man/getAutoKM.Rd
e3e2715fa6fed0f8f76ea0dfbd333327 *man/getAutoKM.list.Rd
a640c1e7c434cbe00e4215915f3f7c1d *man/getCutoffAutoKM.Rd
b91cf23d12655d2febc844305b2e8af6 *man/getCutoffAutoKM.list.Rd
caec323fb31ac85cf279e463adf73132 *man/getDesign.MB.Rd
71a85cf47585213d83e04e84f9995fcb *man/getEPV.Rd
dbda6a35337d18051116a42183eeda4a *man/getEPV.mb.Rd
13787a33902878b7006249faeaf7bdcc *man/getTestKM.Rd
65bda63fa0fd7c63bcc109b178054b2c *man/getTestKM.list.Rd
1fed60f0c938f24eae80cb95717257f1 *man/getTrainTest.Rd
9f0d84c63c13d68f842daf02839ce5d0 *man/integ.Rd
b6d82b3211abba4acae9d8ea3c4773e7 *man/isb.splsdacox.Rd
89b21ffcd4e64a730220f7d5520c7b96 *man/isb.splsdrcox.Rd
372c4d9917be268c9a7d22842f09155b *man/isb.splsdrcox_penalty.Rd
af9bc977578fe475e23a92a7b07dd90f *man/isb.splsicox.Rd
940c2127ddd6e0c2c187b0c4bc4a3397 *man/ker_dis_i.Rd
7e91e850784797a3199536a7f14f001d *man/kfunc.Rd
14431f3812cc7b1f77bee6ff5141ea29 *man/kfunction.Rd
3b41e67cb41ff04521d307465b2df79f *man/loadingplot.Coxmos.Rd
48507c12840a50cc0cc8724cb4f64053 *man/loadingplot.fromVector.Coxmos.Rd
77c022b350b44944e3b146f5d5a28f73 *man/mb.coxmos.Rd
1fb361f5e72d1d156a5b8eca52957a66 *man/mb.splsdacox.Rd
8bb3b39fb3b24d934d737ef074095e66 *man/mb.splsdrcox.Rd
1ecf71d06d594a4290188e98a10ebff1 *man/muro.Rd
264c5ab26e89c513b0939078231a80b1 *man/norm01.Rd
22729b4adf4ee97aac5a72ac98e3356d *man/plot_Coxmos.MB.PLS.model.Rd
ecb410f677dd01d502e9f5f14910e956 *man/plot_Coxmos.PLS.model.Rd
f39743fa20cea052ecd283db34b56fbb *man/plot_cox.event.Rd
d678bae3201b4c707ae336070003c123 *man/plot_cox.event.list.Rd
542aaa22c9eac71b68f2f80793ff644f *man/plot_divergent.biplot.Rd
2a2bb8aa581489a18ece000f6113c3ef *man/plot_evaluation.Rd
8fc469e701e447dfb0901107729f7cd5 *man/plot_evaluation.list.Rd
5b6328371a94ca90f1b6cf06d1073d9d *man/plot_events.Rd
b3f4cb1c2a6c4628911ea67609c9f882 *man/plot_forest.Rd
b0b45e0f1f1178d4cd557466de3f2bac *man/plot_forest.list.Rd
4bf7cbaf04ce89746d6e6d0b1ec21493 *man/plot_multipleObservations.LP.Rd
d7c53c94741539f8d257774e49123e65 *man/plot_multipleObservations.LP.list.Rd
5f0d979583bb804c3308ec5f0c115661 *man/plot_observation.eventDensity.Rd
4eacf6f55a2efab8cb660a92b543cb8d *man/plot_observation.eventHistogram.Rd
8f85f38ede3fb7b9cd38d7a3a5b96bad *man/plot_observation.pseudobeta.Rd
357703fb983a9b9571a29ffbb76022a0 *man/plot_observation.pseudobeta.list.Rd
0c971a00ec1c36abde85e01eccc24d61 *man/plot_proportionalHazard.Rd
3d70ba6ae289421bf38b0c1207751eac *man/plot_proportionalHazard.list.Rd
d4eeb1e2780f49b3d8f9f5dde6784996 *man/plot_pseudobeta.Rd
f8c5fc721e7b6c2b64e92ad2fb5d9a6d *man/plot_pseudobeta.list.Rd
fc9030b8f0e3b94085323c66352486b1 *man/plot_sPLS_Coxmos.Rd
59eaa75e8ebead20b84d59300ca4164e *man/plot_time.list.Rd
569ab41819580facaf2b321cddd75cfe *man/predict.Coxmos.Rd
ca3c2bf5e088207a9a42a1e754909cb9 *man/print.Coxmos.Rd
fd1803d71e6a797d7ee80a9d843c0ba5 *man/save_ggplot.Rd
af80dfe7be277b1739b1dd310da9c8a9 *man/save_ggplot_lst.Rd
c7a6e9268c6ff732aacdb5a329628b7f *man/sb.splsdacox.Rd
48dde277f0549d12585822b0fb2847ac *man/sb.splsdrcox.Rd
43f4188482d8a7afd4dc5156d991c8cc *man/sb.splsdrcox_penalty.Rd
9ec74a4d072c7393835b1b35a36bed57 *man/sb.splsicox.Rd
04a6cf215c787d70c49726aac6d79950 *man/splsdacox.Rd
eba85e4db3b1eb446e25b0186d631838 *man/splsdrcox.Rd
f926c0f0b99693be8e9c2a68768a2f38 *man/splsdrcox_penalty.Rd
ad76339572b0582d71f20a04e602b598 *man/splsicox.Rd
4c47fa040d2d3bcaa6d6ffcad2385e70 *man/transformIllegalChars.Rd
2e72fcd4d11cad854b3a27bf169e73ee *man/w.starplot.Coxmos.Rd
42be7d25d0a7c294d5b7417d5e35193b *man/wIQR.Rd
a174157a0645016023a68663241584ca *man/wbw.Rd
37fcc2f278c8585fb56a6826c864bbcc *man/wquantile.Rd
7d6e36746567effb09389b66fbacf601 *man/wvar.Rd
1995962ac6938b5c0c34502043a49db9 *src/Coxmos_init.c
329e173714e4a29205ad32a71e5dae4f *src/condSURV_init.c
574d371f6f8e12537c58470a100fdd9a *src/survivalBIV.c
10a3ab2c35f4bb2013dab150726462a6 *vignettes/Coxmos-MO-pipeline.Rmd
56b46ed195fecd8b853d38b753c91fee *vignettes/Coxmos-pipeline.Rmd
