# 6. Spatial Analysis

#### Tobias Stephan

#### 2025-05-22

This vignette demonstrates some additional spatially interpolated statistics of a stress field.

    library(tectonicr)
    library(ggplot2) # load ggplot library

    data("san_andreas")

    data("cpm_models")
    por <- cpm_models[["NNR-MORVEL56"]] |>
      equivalent_rotation("na", "pa")

    plate_boundary <- subset(plates, plates$pair == "na-pa")

`circular_summary()` yields several statistics estimates for a given vector of angles, such as mean, median, standard deviation, quasi-quantiles, mode, 95% confidence angle, as wells as the moments (, i.e. 2nd moment = variance, 3rd = skewness, 4th = kurtosis):

    circular_summary(san_andreas$azi, w = 1 / san_andreas$unc)
    #>            n         mean           sd          var          25% quasi-median
    #> 1126.0000000    9.9840096   19.2389339    0.2018830   15.0000000   35.6250119
    #>          75%       median           CI     skewness     kurtosis            R
    #>  160.0000000    9.0000000    5.4361579   -0.3002548    2.4245403    0.7981170

## Spatial analysis

Spatial analysis and interpolation of stress data using `stress2grid_stats()` or `PoR_stress2grid_stats()` (analysis in the PoR coordinate system) uses a moving window with a user defined cell-size (im km) and calculates the summary statistics within each cell:

    spatial_stats_R <- PoR_stress2grid_stats(san_andreas, PoR = por, gridsize = 1, R_range = 100)
    subset(spatial_stats_R, !is.na(mean)) |> head()
    #> Simple feature collection with 6 features and 23 fields
    #> Geometry type: POINT
    #> Dimension:     XY
    #> Bounding box:  xmin: -110.8569 ymin: 34.99224 xmax: -107.9222 ymax: 39.97615
    #> Geodetic CRS:  WGS 84
    #> # A tibble: 6 × 24
    #>   lon.PoR lat.PoR mean.PoR    sd   var `25%.PoR` `quasi-median.PoR` `75%.PoR`
    #>     <dbl>   <dbl>    <dbl> <dbl> <dbl>     <dbl>              <dbl>     <dbl>
    #> 1    84.8   -61.2     62.8  32.7 0.479      45.8               70.7      72.3
    #> 2    85.8   -61.2     84.3  35.0 0.527      70.7               74.9     128.
    #> 3    86.8   -61.2    116.   49.9 0.781      54.9               90.7     111.
    #> 4    75.8   -60.2    148.   22.2 0.259     148.               151.      158.
    #> 5    82.8   -60.2     72.7  14.9 0.127      67.8               75.9      95.5
    #> 6    83.8   -60.2     81.6  22.0 0.255      47.9               76.9      78.0
    #> # ℹ 16 more variables: median.PoR <dbl>, CI <dbl>, skewness <dbl>,
    #> #   kurtosis <dbl>, meanR <dbl>, R <dbl>, N <int>, mdr <dbl>,
    #> #   geometry <POINT [°]>, lat <dbl>, lon <dbl>, mean <dbl>, `25%` <dbl>,
    #> #   `quasi-median` <dbl>, `75%` <dbl>, median <dbl>

One can also specify a range of cell-sizes for a wavelength analysis:

    spatial_stats <- PoR_stress2grid_stats(san_andreas, PoR = por, gridsize = 1, R_range = seq(50, 350, 100), mode = TRUE)

The mean azimuth for each grid cell:

    trajectories <- eulerpole_loxodromes(x = por, n = 40, cw = FALSE)

    ggplot(spatial_stats) +
      geom_sf(data = plate_boundary, color = "red") +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(data = san_andreas, aes(lon, lat, angle = deg2rad(90 - azi)), radius = .3, linewisth = .5, color = "grey30", position = "center_spoke") +
      geom_spoke(aes(lon, lat, angle = deg2rad(90 - mean), alpha = sd, color = mdr), radius = .75, position = "center_spoke", lwd = 1) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat)) +
      scale_alpha(name = "Standard deviation", range = c(1, .25)) +
      scale_color_viridis_c(
        "Wavelength\n(R-normalized mean distance)",
        limits = c(0, 1),
        breaks = seq(0, 1, .25)
      ) +
      facet_wrap(~R)

To filter the range of search windows to only keep the shortest wavelength (R) with the least variance for each grid cell, use compact_grid2().

    spatial_stats_comp <- spatial_stats |>
      compact_grid2(var)

Interpolated median stress field color-coded by the skewness within each search window:

    ggplot(spatial_stats_comp) +
      geom_sf(data = plate_boundary, color = "red") +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(data = san_andreas, aes(lon, lat, angle = deg2rad(90 - azi)), radius = .3, color = "grey30", position = "center_spoke") +
      geom_spoke(aes(lon, lat, angle = deg2rad(90 - median), alpha = CI, color = skewness), radius = .5, position = "center_spoke", lwd = 1) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat)) +
      scale_alpha(name = "95% CI", range = c(1, .25)) +
      scale_color_viridis_c(
        "Skewness"
      )

Interpolated mode of the stress field color-coded by the absolute kurtosis within each search window:

    ggplot(spatial_stats_comp) +
      geom_sf(data = plate_boundary, color = "red") +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(data = san_andreas, aes(lon, lat, angle = deg2rad(90 - azi)), radius = .3, color = "grey30", position = "center_spoke") +
      geom_spoke(aes(lon, lat, angle = deg2rad(90 - mode), alpha = CI, color = abs(kurtosis)), radius = .5, position = "center_spoke", lwd = 1) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat)) +
      scale_alpha(name = "95% CI", range = c(1, .25)) +
      scale_color_viridis_c(
        "|Kurtosis|"
      )

## Heat maps for the spatial statistics

`PoR_stress2grid_stats()` and `stress2grid_stats()` allow to create heatmaps showing the spatial patterns of any desired statistical estimate (from `circular_summary()`). Some examples:

### Spatial central moments

#### Spatial variance

    ggplot(spatial_stats_comp) +
      ggforce::geom_voronoi_tile(
        aes(lon, lat, fill = var),
        max.radius = .7, normalize = FALSE
      ) +
      scale_fill_viridis_c(limits = c(0, 1)) +
      geom_sf(data = plate_boundary, color = "red") +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(
        aes(lon, lat, angle = deg2rad(90 - mean)),
        radius = .5, position = "center_spoke", lwd = .2, colour = "white"
      ) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat))

#### Skewness:

Skewness is a measure for the asymmetry of the probability distribution. It can be either counterclockwise or clockwise skewed, hence values can range between negative and positive numbers, respectively. This can be best visualized in a diverging color-sequence:

    ggplot(spatial_stats_comp) +
      ggforce::geom_voronoi_tile(
        aes(lon, lat, fill = skewness),
        max.radius = .7, normalize = FALSE
      ) +
      scale_fill_gradient2("|Skewness|", low = "#001260", mid = "#EBE5E0", high = "#590007") +
      geom_sf(data = plate_boundary, color = "red") +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(
        aes(lon, lat, angle = deg2rad(90 - median), alpha = var),
        radius = .5, position = "center_spoke", lwd = .2, colour = "white"
      ) +
      scale_alpha("variance", range = c(1, 0)) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat))

#### Kurtosis

Kurtosis is a measure of the “tailedness” of the probability distribution. Here, colors are in a square-root scale:

    ggplot(spatial_stats_comp) +
      ggforce::geom_voronoi_tile(
        aes(lon, lat, fill = abs(kurtosis)),
        max.radius = .7, normalize = FALSE
      ) +
      scale_fill_viridis_c("|Kurtosis|", transform = "sqrt") +
      geom_sf(data = plate_boundary, color = "red") +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(
        aes(lon, lat, angle = deg2rad(90 - mode), alpha = var),
        radius = .5, position = "center_spoke", lwd = .2, colour = "white"
      ) +
      scale_alpha("variance", range = c(1, 0)) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat))

### Kernel dispersion

Another way to analyse spatial misfits is the kernel dispersion, i.e. the local dispersion within a user-defined window (kernel). The kernel´s half width can be a single number (km) or a range of widths. The latter requires to compact the grid result (`x`) to find the smallest kernel size containing the the least dispersion (`compact_grid(x, 'dispersion')`).

> It is recommended to calculate the kernel dispersion on PoR transformed data to avoid angle distortions due to projections.

    san_andreas_por <- san_andreas
    san_andreas_por$azi <- PoR_shmax(san_andreas, por, "right")$azi.PoR # transform to PoR azimuth
    san_andreas_por$prd <- 135 # test direction
    san_andreas_kdisp <- kernel_dispersion(san_andreas_por, gridsize = 1, R_range = seq(50, 350, 100))
    san_andreas_kdisp <- compact_grid(san_andreas_kdisp, "dispersion")

    ggplot(san_andreas_kdisp) +
      ggforce::geom_voronoi_tile(
        aes(lon, lat, fill = stat),
        max.radius = .7, normalize = FALSE
      ) +
      scale_fill_viridis_c("Dispersion", limits = c(0, 1)) +
      geom_sf(data = trajectories, lty = 2) +
      geom_spoke(
        data = san_andreas,
        aes(lon, lat, angle = deg2rad(90 - azi), alpha = unc),
        radius = .5, position = "center_spoke", lwd = .2, colour = "white"
      ) +
      scale_alpha("Standard deviation", range = c(1, .25)) +
      coord_sf(xlim = range(san_andreas$lon), ylim = range(san_andreas$lat))