GlmmSeq-class           An S4 class to define the glmmSeq output
fcPlot                  Plotly or ggplot fold change plots
ggmodelPlot             Mixed model effects plot using ggplot2
glmmQvals               Glmm Sequencing qvalues
glmmRefit               Refit mixed effects model
glmmSeq                 GLMM with negative binomial distribution for
                        sequencing count data
lmmSeq                  Linear mixed models for data matrix
lmmSeq-class            An S4 class to define the lmmSeq output
maPlot                  MA plots
metadata                Minimal metadata from PEAC
modelPlot               Mixed model effects plot
summary.lmmSeq          Summarise a 'glmmSeq'/'lmmSeq' object
tpm                     TPM count data from PEAC
