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Contents of README:SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny. Features: - Reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. - Drives programs muscle or Clustal Omega for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. - Drives the Gblocks program to select blocks of evolutionarily conserved sites. - Computes phylogenetic trees by parsimony, using PHYLIP's dnapars / protpars algorithm, distance, with NJ or BioNJ algorithms on a variety of evolutionary distances, maximum likelihood, driving program PhyML - Can use the Transfer Bootstrap Expectation method to compute the bootstrap support of PhyML and distance trees. - Uses the Treerecs method to reconcile gene and species trees. - Prints and draws phylogenetic trees on screen, SVG, PDF or PostScript files. - Allows to download sequences from EMBL / GenBank / UniProt. For details and citation: Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2):221-224. |
Name Last modified Size
Parent Directory - README 12-Jan-2020 02:55 1.3K References 26-Nov-2013 10:57 216 doinst.sh 26-Nov-2013 10:57 129 seaview.SlackBuild 19-Sep-2020 04:00 3.7K seaview.desktop 26-Nov-2013 10:57 114 seaview.info 19-Sep-2020 04:00 374 slack-desc 14-Jun-2018 16:00 797
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