Welcome to ftp.nluug.nl Current directory: /os/Linux/distr/salix/sbo/14.2/academic/meme-suite/ |
|
Contents of README:The MEME suite: motif based sequence analysis tools The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. The Suite supports motif- based analysis of DNA, RNA and protein sequences. It provides motif discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2). In addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing ChIP-seq and other large datasets (MEME-ChIP). Check README.TESTS for runing the recommended tests on the compiled executables. Here, the tests *FAIL* on a 32bit system! Check README.DATABASES for more info or if you want to install meme-suite without the databases present at build time. To cite the full MEME suite: Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble, "MEME SUITE: tools for motif discovery and searching", Nucleic Acids Research, 37:W202-W208, 2009. To cite individual tools, please check the citation page: http://meme-suite.org/doc/cite.html |
Name Last modified Size
Parent Directory - README 12-Jan-2020 02:55 1.6K README.DATABASES 12-Jan-2020 02:55 488 README.TESTS 12-Jan-2020 02:55 938 References 12-Jan-2020 02:55 8.4K meme-suite.SlackBuild 19-Sep-2020 04:00 3.8K meme-suite.info 19-Sep-2020 04:00 371 slack-desc 14-Jun-2018 16:00 966
NLUUG - Open Systems. Open Standards
Become a member
and get discounts on conferences and more, see the NLUUG website!