Motif Databases (updated 28 Oct 2019) to be used with MEME Suite:

Eukaryote DNA (13 Databases)
Prokaryote DNA (4 Databases)
Methylcytosine DNA (1 Databases)
JASPAR (NON-REDUNDANT) DNA (21 Databases)
JASPAR (REDUNDANT) DNA (21 Databases)
JASPAR COLLECTIONS DNA (5 Databases)
TFBSshape DNA (3 Databases)
CIS-BP Single Species DNA (321 Databases)
ARABIDOPSIS (Arabidopsis thaliana) DNA (2 Databases)
ECOLI (Escherichia coli) DNA (2 Databases)
FLY (Drosophila melanogaster) DNA (6 Databases)
HUMAN (Homo sapiens) DNA (4 Databases)
MALARIA (Plasmodia falciparum) DNA (1 Databases)
MOUSE (Mus musculus) DNA (5 Databases)
WORM (Caenorhabditis elegans) DNA (1 Databases)
YEAST (Saccharomyces_cerevisiae) DNA (6 Databases)
CISBP-RNA Single Species RNA (268 Databases)
CISBP-RNA Single Species RNA (DNA-encoded) (268 Databases)
RNA (25 Databases)
RNA (DNA-encoded) (25 Databases)
miRBase Single Species microRNA (223 Databases)
miRBase Single Species microRNA (DNA-encoded) (223 Databases)
Protein Motifs (2 Databases)

Note!
The unarchived size of this is ~140 MB