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Contents of README:PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). This also builds MPI (using multiple processors) version of PhyML, which requires 'openmpi'. Other additional programs built by the script are Phyrex and PhyTime. If you do not want them to be built in the package, check the SlackBuild script. For details and citation New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. Systematic Biology, 59(3):307-21, 2010. |
Name Last modified Size
Parent Directory -
PhyML.SlackBuild 19-Sep-2020 04:00 4.8K
PhyML.info 19-Sep-2020 04:00 343
README 14-Jun-2018 16:00 1.1K
References 02-Jul-2016 02:48 383
slack-desc 14-Jun-2018 16:00 931
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