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VLMarkov Class Reference

Variable Markov modelling, estimation and simulation. More...

#include <seqpp/VLMarkov.h>

Inheritance diagram for VLMarkov:

Markov PhasedMarkov List of all members.

Public Member Functions

template<class TSeq>
 VLMarkov (const TSeq &tseq, vector< double > &init, double cutoff)
 Constructor 1 from a SequenceSet or a Sequence.
template<class TSeq>
 VLMarkov (const TSeq &tseq, double cutoff)
 Constructor 2 from a SequenceSet or a Sequence with random init.

Protected Attributes

vlm_tree * _vlmtree
 Variable Length Context Tree.

Detailed Description

Variable Markov modelling, estimation and simulation.

This is a special case of a phased Variable LengthMarkov [PhasedVLMarkov] model when only one phase is considered, and also a Markov object.


Constructor & Destructor Documentation

template<class TSeq>
VLMarkov::VLMarkov const TSeq &  tseq,
vector< double > &  init,
double  cutoff
[inline]
 

Constructor 1 from a SequenceSet or a Sequence.

Parameters:
tseq a (set of) sequence(s) for estimation
init initial law in the leaves
cutoff tree selection cutoff

template<class TSeq>
VLMarkov::VLMarkov const TSeq &  tseq,
double  cutoff
[inline]
 

Constructor 2 from a SequenceSet or a Sequence with random init.

Parameters:
tseq a (set of) sequence(s) for estimation
cutoff tree selection cutoff


The documentation for this class was generated from the following file:



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