Package Bio :: Package Medline :: Module nlmmedline_011101_format
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Module Bio.Medline.nlmmedline_011101_format

nlmmedline_xml_format.py

A Martel format to parse the NLM's XML format for Medline.

http://www.nlm.nih.gov/databases/dtd/nlmmedline_011101.dtd http://www.nlm.nih.gov/databases/dtd/nlmmedlinecitation_011101.dtd http://www.nlm.nih.gov/databases/dtd/nlmcommon_011101.dtd

Formats: citation_format Format for one MedlineCitation. format Format for a whole file.
Function Summary
  group_elem(element, expr, *attrs)
  simple_elem(element, *attrs)
simple_elem(element, *attrs)

Variable Summary
Alt author_name = <Martel.Expression.Alt instance at 0x2aaaa...
Group citation_format = <Martel.Expression.Group instance at 0...
Seq DeleteCitation_end = <Martel.Expression.Seq instance at ...
Seq DeleteCitation_start = <Martel.Expression.Seq instance a...
Seq DOCTYPE = <Martel.Expression.Seq instance at 0x2aaaae3e9...
list elements = ['Year', 'Month', 'Day', 'Season', 'MedlineDa...
Seq footer_format = <Martel.Expression.Seq instance at 0x2aa...
HeaderFooter format = <Martel.Expression.HeaderFooter instance at 0x2...
Group header_format = <Martel.Expression.Group instance at 0x2...
Seq MedlineCitationSet_end = <Martel.Expression.Seq instance...
Seq normal_date = <Martel.Expression.Seq instance at 0x2aaaa...
Seq personal_name = <Martel.Expression.Seq instance at 0x2aa...
Alt pub_date = <Martel.Expression.Alt instance at 0x2aaaae3c...
Seq Ref_template = <Martel.Expression.Seq instance at 0x2aaa...
Any space = <Martel.Expression.Any instance at 0x2aaaae3e736...

Function Details

simple_elem(element, *attrs)

simple_elem(element, *attrs)

Create a Martel Expression in this module's namespace that will recognize an XML element in the form of: <element>data</element>

The whole element must be on a single line. The Expression will be created in the module's namespace with the same name as the element.

Variable Details

author_name

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0x2aaaae3c5908>                     

citation_format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae3e7bd8>                   

DeleteCitation_end

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3e7ef0>                     

DeleteCitation_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3e7dd0>                     

DOCTYPE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3e95f0>                     

elements

Type:
list
Value:
['Year', 'Month', 'Day', 'Season', 'MedlineDate', 'Hour', 'Minute', 'S\
econd']                                                                

footer_format

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3e9710>                     

format

Type:
HeaderFooter
Value:
<Martel.Expression.HeaderFooter instance at 0x2aaaae3e9758>            

header_format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae3e9638>                   

MedlineCitationSet_end

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3e7fc8>                     

normal_date

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3c8d88>                     

personal_name

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3c5950>                     

pub_date

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0x2aaaae3c8ef0>                     

Ref_template

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae3dee18>                     

space

Type:
Any
Value:
<Martel.Expression.Any instance at 0x2aaaae3e7368>                     

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