Package Bio :: Package expressions :: Package blast :: Module ncbiblast
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Module Bio.expressions.blast.ncbiblast

Function Summary
  float_param(name)
  float_stat(name)
  int_param(name, signed, comma)
  int_stat(name, signed, comma)
  Number(name, attrs)
  _bit_info(s, name)
  _num_stat(name, signed, comma)
  _nv(s, expr)

Variable Summary
Seq a_info = <Martel.Expression.Seq instance at 0x2aaaae57f5...
Group alignment = <Martel.Expression.Group instance at 0x2aaaa...
Alt blast_filter = <Martel.Expression.Alt instance at 0x2aaa...
Group blastn = <Martel.Expression.Group instance at 0x2aaaae58...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0x2aa...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identical = <Martel.Expression.Seq instance at 0x...
Group blastp = <Martel.Expression.Group instance at 0x2aaaae5a...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0x2aa...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_identical = <Martel.Expression.Seq instance at 0x...
Group blastx = <Martel.Expression.Group instance at 0x2aaaae5a...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0x2aa...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq db_stats = <Martel.Expression.Seq instance at 0x2aaaae57...
Group expect = <Martel.Expression.Group instance at 0x2aaaae56...
Group format = <Martel.Expression.Group instance at 0x2aaaae58...
Seq frame = <Martel.Expression.Seq instance at 0x2aaaae57156...
Seq frameshift_info = <Martel.Expression.Seq instance at 0x2...
Seq gap_penalties_stats = <Martel.Expression.Seq instance at...
Seq gapped_lambda_stats = <Martel.Expression.Seq instance at...
Seq generic_info1 = <Martel.Expression.Seq instance at 0x2aa...
Seq generic_info2 = <Martel.Expression.Seq instance at 0x2aa...
Group header = <Martel.Expression.Group instance at 0x2aaaae56...
Group hit = <Martel.Expression.Group instance at 0x2aaaae5736c...
Seq hit_descr = <Martel.Expression.Seq instance at 0x2aaaae5...
Seq hit_length = <Martel.Expression.Seq instance at 0x2aaaae...
Seq homology_line = <Martel.Expression.Seq instance at 0x2aa...
Group hsp = <Martel.Expression.Group instance at 0x2aaaae57363...
Seq hsp_info = <Martel.Expression.Seq instance at 0x2aaaae57...
Group hsp_length = <Martel.Expression.Group instance at 0x2aaa...
Seq lambda_stats = <Martel.Expression.Seq instance at 0x2aaa...
Seq matrix_stats = <Martel.Expression.Seq instance at 0x2aaa...
Group ncbi_version = <Martel.Expression.Group instance at 0x2a...
Group num_bits = <Martel.Expression.Group instance at 0x2aaaae...
Group num_identical = <Martel.Expression.Group instance at 0x2...
Group num_positives = <Martel.Expression.Group instance at 0x2...
Seq query_database = <Martel.Expression.Seq instance at 0x2a...
Group query_descr = <Martel.Expression.Group instance at 0x2aa...
Seq query_letters = <Martel.Expression.Seq instance at 0x2aa...
Seq query_line = <Martel.Expression.Seq instance at 0x2aaaae...
Seq s1_info = <Martel.Expression.Seq instance at 0x2aaaae582...
Seq s2_info = <Martel.Expression.Seq instance at 0x2aaaae583...
Seq score = <Martel.Expression.Seq instance at 0x2aaaae56ab9...
Seq spaces_line = <Martel.Expression.Seq instance at 0x2aaaa...
Seq strand = <Martel.Expression.Seq instance at 0x2aaaae5720...
Seq subject_line = <Martel.Expression.Seq instance at 0x2aaa...
Seq t_info = <Martel.Expression.Seq instance at 0x2aaaae57eb...
Group table = <Martel.Expression.Group instance at 0x2aaaae567...
Group table_entry = <Martel.Expression.Group instance at 0x2aa...
Group tblastn = <Martel.Expression.Group instance at 0x2aaaae5...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_ending = <Martel.Expression.Seq instance at 0x2a...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0x2aa...
Group tblastx = <Martel.Expression.Group instance at 0x2aaaae5...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastx_ending = <Martel.Expression.Seq instance at 0x2a...
Seq tblastx_frame = <Martel.Expression.Seq instance at 0x2aa...
Seq tblastx_hsp_header = <Martel.Expression.Seq instance at ...
Group to_table = <Martel.Expression.Group instance at 0x2aaaae...
Seq ungapped_lambda_stats = <Martel.Expression.Seq instance ...
Seq x1_info = <Martel.Expression.Seq instance at 0x2aaaae57f...
Seq x2_info = <Martel.Expression.Seq instance at 0x2aaaae580...
Seq x3_info = <Martel.Expression.Seq instance at 0x2aaaae581...
Seq _comma_digits = <Martel.Expression.Seq instance at 0x2aa...

Variable Details

a_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57f5a8>                     

alignment

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5733f8>                   

blast_filter

Type:
Alt
Value:
<Martel.Expression.Alt instance at 0x2aaaae55f0e0>                     

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae58c5a8>                   

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae55f6c8>                     

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae583248>                     

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae573290>                     

blastn_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae56cab8>                     

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5a1c20>                   

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae55f950>                     

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5831b8>                     

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5732d8>                     

blastp_identical

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae56aea8>                     

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5ac2d8>                   

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae55fbd8>                     

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae583290>                     

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae573050>                     

db_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae573e60>                     

expect

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae569560>                   

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae583cf8>                   

frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae571560>                     

frameshift_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57e8c0>                     

gap_penalties_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57a710>                     

gapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae578ea8>                     

generic_info1

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57c098>                     

generic_info2

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57cd40>                     

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae56b950>                   

hit

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5736c8>                   

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae569440>                     

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae56bc20>                     

homology_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae572ab8>                     

hsp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae573638>                   

hsp_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57e488>                     

hsp_length

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae569680>                   

lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5780e0>                     

matrix_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57a290>                     

ncbi_version

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae55f128>                   

num_bits

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5694d0>                   

num_identical

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5695f0>                   

num_positives

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae569878>                   

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5647e8>                     

query_descr

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5627a0>                   

query_letters

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5624d0>                     

query_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5728c0>                     

s1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5823b0>                     

s2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae583170>                     

score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae56ab90>                     

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5dbdd0>                     

strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5720e0>                     

subject_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae573248>                     

t_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57ebd8>                     

table

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae567290>                   

table_entry

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5671b8>                   

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5b4950>                   

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae55fe60>                     

tblastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae583290>                     

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae573320>                     

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae56c950>                     

tblastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5bcfc8>                   

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae562128>                     

tblastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae583200>                     

tblastx_frame

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5718c0>                     

tblastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5733b0>                     

to_table

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae564b00>                   

ungapped_lambda_stats

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae574dd0>                     

x1_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae57fa70>                     

x2_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae580830>                     

x3_info

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5815f0>                     

_comma_digits

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae564128>                     

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