Package Bio :: Package expressions :: Module transfac
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Module Bio.expressions.transfac

A Martel format to parse the output from transfac.

Formats: format Format for a whole file.
Function Summary
  SS(exp)

Variable Summary
Seq blank_line = <Martel.Expression.Seq instance at 0x2aaaae...
Seq DATA_LINE = <Martel.Expression.Seq instance at 0x2aaaae6...
Seq format = <Martel.Expression.Seq instance at 0x2aaaae6b78...
Seq FOUND_SITES_LINE = <Martel.Expression.Seq instance at 0x...
Seq MATRIX_LINE = <Martel.Expression.Seq instance at 0x2aaaa...
Seq PROFILE_LINE = <Martel.Expression.Seq instance at 0x2aaa...
Seq SEQUENCE_LINE = <Martel.Expression.Seq instance at 0x2aa...
Seq SEQUENCES_LENGTH_LINE = <Martel.Expression.Seq instance ...
Seq SITE_FREQUENCY_LINE = <Martel.Expression.Seq instance at...
Seq TITLE_LINE = <Martel.Expression.Seq instance at 0x2aaaae...

Variable Details

blank_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b2488>                     

DATA_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b6ea8>                     

format

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b7830>                     

FOUND_SITES_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b7488>                     

MATRIX_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b2908>                     

PROFILE_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b2fc8>                     

SEQUENCE_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b2b90>                     

SEQUENCES_LENGTH_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b7128>                     

SITE_FREQUENCY_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b7a28>                     

TITLE_LINE

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae6b3b90>                     

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