Package Bio :: Package Data :: Module IUPACData
[show private | hide private]
[frames | no frames]

Module Bio.Data.IUPACData

Function Summary
  _make_ambiguous_ranges(dict, weight_table)
  _make_ranges(dict)

Variable Summary
dict ambiguous_dna_complement = {'A': 'T', 'C': 'G', 'B': 'V'...
str ambiguous_dna_letters = 'GATCRYWSMKHBVDN'
dict ambiguous_dna_values = {'A': 'A', 'C': 'C', 'B': 'CGT', ...
dict ambiguous_dna_weight_ranges = {'A': (347.0, 347.0), 'C':...
dict ambiguous_rna_complement = {'A': 'U', 'C': 'G', 'B': 'V'...
str ambiguous_rna_letters = 'GAUCRYWSMKHBVDN'
dict ambiguous_rna_values = {'A': 'A', 'C': 'C', 'B': 'CGU', ...
dict ambiguous_rna_weight_ranges = {'A': (363.0, 363.0), 'C':...
dict avg_ambiguous_dna_weights = {'A': 347.0, 'C': 323.0, 'B'...
dict avg_ambiguous_rna_weights = {'A': 363.0, 'C': 339.0, 'B'...
dict avg_extended_protein_weights = {'A': 89.090000000000003,...
str extended_dna_letters = 'GATCBDSW'
str extended_protein_letters = 'ACDEFGHIKLMNPQRSTVWYBXZ'
dict extended_protein_values = {'A': 'A', 'C': 'C', 'B': 'ND'...
dict extended_protein_weight_ranges = {'A': (89.0900000000000...
str protein_letters = 'ACDEFGHIKLMNPQRSTVWY'
dict protein_weight_ranges = {'A': (89.090000000000003, 89.09...
dict protein_weights = {'A': 89.090000000000003, 'C': 121.16,...
str unambiguous_dna_letters = 'GATC'
dict unambiguous_dna_weight_ranges = {'A': (347.0, 347.0), 'C...
dict unambiguous_dna_weights = {'A': 347.0, 'C': 323.0, 'T': ...
str unambiguous_rna_letters = 'GAUC'
dict unambiguous_rna_weight_ranges = {'A': (363.0, 363.0), 'C...
dict unambiguous_rna_weights = {'A': 363.0, 'C': 339.0, 'U': ...

Variable Details

ambiguous_dna_complement

Type:
dict
Value:
{'A': 'T',
 'B': 'V',
 'C': 'G',
 'D': 'H',
 'G': 'C',
 'H': 'D',
 'K': 'M',
 'M': 'K',
...                                                                    

ambiguous_dna_letters

Type:
str
Value:
'GATCRYWSMKHBVDN'                                                      

ambiguous_dna_values

Type:
dict
Value:
{'A': 'A',
 'B': 'CGT',
 'C': 'C',
 'D': 'AGT',
 'G': 'G',
 'H': 'ACT',
 'K': 'GT',
 'M': 'AC',
...                                                                    

ambiguous_dna_weight_ranges

Type:
dict
Value:
{'A': (347.0, 347.0),
 'B': (322.0, 363.0),
 'C': (323.0, 323.0),
 'D': (322.0, 363.0),
 'G': (363.0, 363.0),
 'H': (322.0, 347.0),
 'K': (322.0, 363.0),
 'M': (323.0, 347.0),
...                                                                    

ambiguous_rna_complement

Type:
dict
Value:
{'A': 'U',
 'B': 'V',
 'C': 'G',
 'D': 'H',
 'G': 'C',
 'H': 'D',
 'K': 'M',
 'M': 'K',
...                                                                    

ambiguous_rna_letters

Type:
str
Value:
'GAUCRYWSMKHBVDN'                                                      

ambiguous_rna_values

Type:
dict
Value:
{'A': 'A',
 'B': 'CGU',
 'C': 'C',
 'D': 'AGU',
 'G': 'G',
 'H': 'ACU',
 'K': 'GU',
 'M': 'AC',
...                                                                    

ambiguous_rna_weight_ranges

Type:
dict
Value:
{'A': (363.0, 363.0),
 'B': (339.0, 379.0),
 'C': (339.0, 339.0),
 'D': (340.0, 379.0),
 'G': (379.0, 379.0),
 'H': (339.0, 363.0),
 'K': (340.0, 379.0),
 'M': (339.0, 363.0),
...                                                                    

avg_ambiguous_dna_weights

Type:
dict
Value:
{'A': 347.0,
 'B': 336.0,
 'C': 323.0,
 'D': 344.0,
 'G': 363.0,
 'H': 330.66666666666669,
 'K': 342.5,
 'M': 335.0,
...                                                                    

avg_ambiguous_rna_weights

Type:
dict
Value:
{'A': 363.0,
 'B': 352.66666666666669,
 'C': 339.0,
 'D': 360.66666666666669,
 'G': 379.0,
 'H': 347.33333333333331,
 'K': 359.5,
 'M': 351.0,
...                                                                    

avg_extended_protein_weights

Type:
dict
Value:
{'A': 89.090000000000003,
 'B': 132.61000000000001,
 'C': 121.16,
 'D': 133.09999999999999,
 'E': 147.13,
 'F': 165.19,
 'G': 75.069999999999993,
 'H': 155.16,
...                                                                    

extended_dna_letters

Type:
str
Value:
'GATCBDSW'                                                             

extended_protein_letters

Type:
str
Value:
'ACDEFGHIKLMNPQRSTVWYBXZ'                                              

extended_protein_values

Type:
dict
Value:
{'A': 'A',
 'B': 'ND',
 'C': 'C',
 'D': 'D',
 'E': 'E',
 'F': 'F',
 'G': 'G',
 'H': 'H',
...                                                                    

extended_protein_weight_ranges

Type:
dict
Value:
{'A': (89.090000000000003, 89.090000000000003),
 'B': (132.12, 133.09999999999999),
 'C': (121.16, 121.16),
 'D': (133.09999999999999, 133.09999999999999),
 'E': (147.13, 147.13),
 'F': (165.19, 165.19),
 'G': (75.069999999999993, 75.069999999999993),
 'H': (155.16, 155.16),
...                                                                    

protein_letters

Type:
str
Value:
'ACDEFGHIKLMNPQRSTVWY'                                                 

protein_weight_ranges

Type:
dict
Value:
{'A': (89.090000000000003, 89.090000000000003),
 'C': (121.16, 121.16),
 'D': (133.09999999999999, 133.09999999999999),
 'E': (147.13, 147.13),
 'F': (165.19, 165.19),
 'G': (75.069999999999993, 75.069999999999993),
 'H': (155.16, 155.16),
 'I': (131.18000000000001, 131.18000000000001),
...                                                                    

protein_weights

Type:
dict
Value:
{'A': 89.090000000000003,
 'C': 121.16,
 'D': 133.09999999999999,
 'E': 147.13,
 'F': 165.19,
 'G': 75.069999999999993,
 'H': 155.16,
 'I': 131.18000000000001,
...                                                                    

unambiguous_dna_letters

Type:
str
Value:
'GATC'                                                                 

unambiguous_dna_weight_ranges

Type:
dict
Value:
{'A': (347.0, 347.0),
 'C': (323.0, 323.0),
 'G': (363.0, 363.0),
 'T': (322.0, 322.0)}                                                  

unambiguous_dna_weights

Type:
dict
Value:
{'A': 347.0, 'C': 323.0, 'T': 322.0, 'G': 363.0}                       

unambiguous_rna_letters

Type:
str
Value:
'GAUC'                                                                 

unambiguous_rna_weight_ranges

Type:
dict
Value:
{'A': (363.0, 363.0),
 'C': (339.0, 339.0),
 'G': (379.0, 379.0),
 'U': (340.0, 340.0)}                                                  

unambiguous_rna_weights

Type:
dict
Value:
{'A': 363.0, 'C': 339.0, 'U': 340.0, 'G': 379.0}                       

Generated by Epydoc 2.1 on Thu Jun 30 22:06:06 2005 http://epydoc.sf.net