Module Bio.HMM.Trainer
Provide trainers which estimate parameters based on training
sequences.
These should be used to 'train' a Markov Model prior to actually using
it to decode state paths. When supplied training sequences and a model to
work from, these classes will estimate paramters of the model.
This aims to estimate two parameters:
* a_{kl} -- the number of times there is a transition from k to l in
the training data.
* e_{k}(b) -- the number of emissions of the state b from the letter k
in the training data.