Package Bio :: Package expressions :: Package blast :: Module wublast
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Module Bio.expressions.blast.wublast

Function Summary
  main(outf)

Variable Summary
Group blastn = <Martel.Expression.Group instance at 0x2aaaae60...
Seq blastn_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastn_ending = <Martel.Expression.Seq instance at 0x2aa...
Seq blastn_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastn_identities = <Martel.Expression.Seq instance at 0...
Seq blastn_score = <Martel.Expression.Seq instance at 0x2aaa...
Seq blastn_strand = <Martel.Expression.Seq instance at 0x2aa...
Group blastp = <Martel.Expression.Group instance at 0x2aaaae5f...
Seq blastp_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastp_ending = <Martel.Expression.Seq instance at 0x2aa...
Seq blastp_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastp_score = <Martel.Expression.Seq instance at 0x2aaa...
Group blastx = <Martel.Expression.Group instance at 0x2aaaae61...
Seq blastx_appheader = <Martel.Expression.Seq instance at 0x...
Seq blastx_ending = <Martel.Expression.Seq instance at 0x2aa...
Seq blastx_hsp_header = <Martel.Expression.Seq instance at 0...
Seq blastx_identities = <Martel.Expression.Seq instance at 0...
Seq blastx_score = <Martel.Expression.Seq instance at 0x2aaa...
Seq blastx_strand = <Martel.Expression.Seq instance at 0x2aa...
Seq blastx_table_entry = <Martel.Expression.Seq instance at ...
Seq blastx_to_database = <Martel.Expression.Seq instance at ...
Seq ending = <Martel.Expression.Seq instance at 0x2aaaae5d33...
Seq ending_start = <Martel.Expression.Seq instance at 0x2aaa...
Group format = <Martel.Expression.Group instance at 0x2aaaae5e...
Group header = <Martel.Expression.Group instance at 0x2aaaae5c...
Seq hit_descr = <Martel.Expression.Seq instance at 0x2aaaae5...
Seq hit_length = <Martel.Expression.Seq instance at 0x2aaaae...
Seq identities = <Martel.Expression.Seq instance at 0x2aaaae...
MaxRepeat parameters = <Martel.Expression.MaxRepeat instance at 0x...
Seq query_database = <Martel.Expression.Seq instance at 0x2a...
Seq spaces_line = <Martel.Expression.Seq instance at 0x2aaaa...
Seq statistics = <Martel.Expression.Seq instance at 0x2aaaae...
Seq table_entry = <Martel.Expression.Seq instance at 0x2aaaa...
Group tblastn = <Martel.Expression.Group instance at 0x2aaaae6...
Seq tblastn_appheader = <Martel.Expression.Seq instance at 0...
Seq tblastn_hsp_header = <Martel.Expression.Seq instance at ...
Seq tblastn_identities = <Martel.Expression.Seq instance at ...
Seq tblastn_score = <Martel.Expression.Seq instance at 0x2aa...
Seq tblastn_strand = <Martel.Expression.Seq instance at 0x2a...
Seq tblastx_appheader = <Martel.Expression.Seq instance at 0...
Seq timestamp = <Martel.Expression.Seq instance at 0x2aaaae5...
Seq to_table = <Martel.Expression.Seq instance at 0x2aaaae5b...
Seq wublast_version = <Martel.Expression.Seq instance at 0x2...

Variable Details

blastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae6093b0>                   

blastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bd200>                     

blastn_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5d33f8>                     

blastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c7a70>                     

blastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c79e0>                     

blastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c4dd0>                     

blastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c7050>                     

blastp

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5f0290>                   

blastp_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bd5a8>                     

blastp_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5d33b0>                     

blastp_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c6050>                     

blastp_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c4dd0>                     

blastx

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae61e320>                   

blastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bd950>                     

blastx_ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5d3440>                     

blastx_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5cb488>                     

blastx_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5cb2d8>                     

blastx_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c4dd0>                     

blastx_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c7050>                     

blastx_table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c8488>                     

blastx_to_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c8d88>                     

ending

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5d3368>                     

ending_start

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5caef0>                     

format

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5e2b48>                   

header

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae5c25f0>                   

hit_descr

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae569440>                     

hit_length

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae56bc20>                     

identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c6560>                     

parameters

Type:
MaxRepeat
Value:
<Martel.Expression.MaxRepeat instance at 0x2aaaae5cc098>               

query_database

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bf758>                     

spaces_line

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5dbdd0>                     

statistics

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5d3320>                     

table_entry

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c02d8>                     

tblastn

Type:
Group
Value:
<Martel.Expression.Group instance at 0x2aaaae6468c0>                   

tblastn_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bdcf8>                     

tblastn_hsp_header

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5ca908>                     

tblastn_identities

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5ca878>                     

tblastn_score

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5c4dd0>                     

tblastn_strand

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5cbef0>                     

tblastx_appheader

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bf0e0>                     

timestamp

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5d2488>                     

to_table

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae5bf7a0>                     

wublast_version

Type:
Seq
Value:
<Martel.Expression.Seq instance at 0x2aaaae608cb0>                     

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