Table of Contents

Class: coords_generator | ../bkchem/oasa/oasa/coords_generator.py
--- | ---
Methods |
--- | ---
__init__ apply_gen_to_atoms calculate_coords process_all_anelated_rings process_atom_neigbors process_one_anelated_ring
| __init__
    __init__ ( self,  bond_length=1 )
| apply_gen_to_atoms
    apply_gen_to_atoms (
            self,
            gen,
            atoms,
            start,
            bond_length=None,
            )
| calculate_coords
    calculate_coords (
            self,
            mol,
            bond_length=0,
            force=0,
            )
the bond_length (when given) sets the self.bond_length, if bond_length == -1 we suppose that there is already part of the molecule containing coords and we calculate the bond_length from it; force says if we should recalc all coords
| process_all_anelated_rings
    process_all_anelated_rings ( self,  base )
| process_atom_neigbors
    process_atom_neigbors ( self,  v )
| process_one_anelated_ring
    process_one_anelated_ring ( self,  base )

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