Tool for the analysis Mass Spectrometry (MS) data in the context of immunopeptidomic analysis for the identification of hybrid peptides and the predictions of binding affinity of all peptides using 'netMHCpan' <doi:10.1093/nar/gkaa379> while providing a summary of the netMHCpan output. 'RHybridFinder' (RHF) is destined for researchers who are looking to analyze their MS data for the purpose of identification of potential spliced peptides. This package, developed mainly in base R, is based on the workflow published by Faridi et al. in 2018 <doi:10.1126/sciimmunol.aar3947>.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | doParallel, foreach, seqinr |
| Suggests: | knitr, rmarkdown |
| Published: | 2021-08-17 |
| DOI: | 10.32614/CRAN.package.RHybridFinder |
| Author: | Frederic Saab [aut, cre], Peter Kubiniok [aut] |
| Maintainer: | Frederic Saab <frederic.saab at umontreal.ca> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | RHybridFinder results |
| Reference manual: | RHybridFinder.pdf |
| Vignettes: |
RHybridFinder (source, R code) |
| Package source: | RHybridFinder_0.2.0.tar.gz |
| Windows binaries: | r-devel: RHybridFinder_0.2.0.zip, r-release: RHybridFinder_0.2.0.zip, r-oldrel: RHybridFinder_0.2.0.zip |
| macOS binaries: | r-devel (arm64): RHybridFinder_0.2.0.tgz, r-release (arm64): RHybridFinder_0.2.0.tgz, r-oldrel (arm64): RHybridFinder_0.2.0.tgz, r-devel (x86_64): RHybridFinder_0.2.0.tgz, r-release (x86_64): RHybridFinder_0.2.0.tgz, r-oldrel (x86_64): RHybridFinder_0.2.0.tgz |
| Old sources: | RHybridFinder archive |
Please use the canonical form https://CRAN.R-project.org/package=RHybridFinder to link to this page.