IDSL.CSA: Composite Spectra Analysis (CSA) for High-Resolution Mass Spectrometry Analyses

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Version: 1.2
Depends: R (≥ 4.0)
Imports: IDSL.MXP, IDSL.IPA, IDSL.FSA, readxl
Published: 2023-06-29
DOI: 10.32614/CRAN.package.IDSL.CSA
Author: Sadjad Fakouri-Baygi ORCID iD [aut], Dinesh Barupal ORCID iD [cre, aut]
Maintainer: Dinesh Barupal <dinesh.barupal at mssm.edu>
BugReports: https://github.com/idslme/idsl.csa/issues
License: MIT + file LICENSE
URL: https://github.com/idslme/idsl.csa
NeedsCompilation: no
Citation: IDSL.CSA citation info
CRAN checks: IDSL.CSA results

Documentation:

Reference manual: IDSL.CSA.pdf

Downloads:

Package source: IDSL.CSA_1.2.tar.gz
Windows binaries: r-devel: IDSL.CSA_1.2.zip, r-release: IDSL.CSA_1.2.zip, r-oldrel: IDSL.CSA_1.2.zip
macOS binaries: r-devel (arm64): IDSL.CSA_1.2.tgz, r-release (arm64): IDSL.CSA_1.2.tgz, r-oldrel (arm64): IDSL.CSA_1.2.tgz, r-devel (x86_64): IDSL.CSA_1.2.tgz, r-release (x86_64): IDSL.CSA_1.2.tgz, r-oldrel (x86_64): IDSL.CSA_1.2.tgz
Old sources: IDSL.CSA archive

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