FAIRmaterials: Ontology Tools with Data FAIRification in Development

Translates several CSV files with ontological terms and corresponding data into RDF triples. These RDF triples are stored in OWL and JSON-LD files, facilitating data accessibility, interoperability, and knowledge unification. The triples are also visualized in a graph saved as an SVG. The input CSVs must be formatted with a template from a public Google Sheet; see README or vignette for more information. This is a tool is used by the SDLE Research Center at Case Western Reserve University to create and visualize material science ontologies, and it includes example ontologies to demonstrate its capabilities. This work was supported by the U.S. Department of Energy’s Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy Technologies Office (SETO) Agreement Numbers E-EE0009353 and DE-EE0009347, Department of Energy (National Nuclear Security Administration) under Award Number DE-NA0004104 and Contract number B647887, and U.S. National Science Foundation Award under Award Number 2133576.

Version: 0.4.2.1
Depends: R (≥ 3.1.1)
Imports: dplyr, rdflib, jsonld, httr, utils, DiagrammeR, DiagrammeRsvg, stringr, xml2, tidyr, readr
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-06-27
DOI: 10.32614/CRAN.package.FAIRmaterials
Author: Jonathan E Gordon ORCID iD [aut], Alexander Harding Bradley ORCID iD [aut], Priyan Rajamohan ORCID iD [aut], Nathaniel Hahn [aut], Kiefer Lin [aut], Arafath Nihar ORCID iD [aut], Hayden Cadwell [aut], Jiana Kambo [aut], Jayvic Jimenez ORCID iD [aut], Kristen J Hernandez ORCID iD [aut], Hein Htet-Aung ORCID iD [aut], Brian Giera ORCID iD [aut], Weiqi Yue ORCID iD [aut], Mohommad Redad Mehdi ORCID iD [aut], Finley Holt [aut], Quynh Tran ORCID iD [aut], Gabriel Ponon ORCID iD [aut], Daniel Savage ORCID iD [aut], Donald Brown [aut], Jarod Kaltenbaugh ORCID iD [aut], Kush Havinal [aut], Nicholas Gray [aut], Max Liggett [aut], Benjamin G Pierce ORCID iD [aut], Raymond Wieser ORCID iD [aut], Yangxin Fan ORCID iD [aut], Tommy Ciardi [aut], Olatunde J Akanbi ORCID iD [aut], Hadiza Iawal ORCID iD [aut], Will Oltjen ORCID iD [aut], Maliesha Kalutotage ORCID iD [aut], Antony Lino [aut], Van Tran ORCID iD [aut], Mingjian Lu [aut], Xuanji Yu ORCID iD [aut], Liangyi Huang ORCID iD [aut], Zelin Li ORCID iD [aut], Abhishek Daundkar [aut], Hope Omodolor ORCID iD [aut], Deepa Bhuvanagiri ORCID iD [aut], Mirra Rasmussen [aut], Sameera Nalin-Venkat ORCID iD [aut], Tian Wang ORCID iD [aut], Rounak Chawla [aut], Leean Jo ORCID iD [aut], Jeffrey M Yarus ORCID iD [aut], Kristopher O Davis ORCID iD [aut], Mengjie Li ORCID iD [aut], Yinghui Wu ORCID iD [aut], Pawan K Tripathi ORCID iD [aut], Laura S Bruckman ORCID iD [aut], Erika I Barcelos ORCID iD [aut], Roger H French ORCID iD [aut, cre, cph]
Maintainer: Roger H French <roger.french at case.edu>
License: BSD_3_clause + file LICENSE
NeedsCompilation: no
CRAN checks: FAIRmaterials results

Documentation:

Reference manual: FAIRmaterials.pdf
Vignettes: FAIRmaterials (source, R code)

Downloads:

Package source: FAIRmaterials_0.4.2.1.tar.gz
Windows binaries: r-devel: FAIRmaterials_0.4.2.1.zip, r-release: FAIRmaterials_0.4.2.1.zip, r-oldrel: FAIRmaterials_0.4.2.1.zip
macOS binaries: r-devel (arm64): FAIRmaterials_0.4.2.1.tgz, r-release (arm64): FAIRmaterials_0.4.2.1.tgz, r-oldrel (arm64): FAIRmaterials_0.4.2.1.tgz, r-devel (x86_64): FAIRmaterials_0.4.2.1.tgz, r-release (x86_64): FAIRmaterials_0.4.2.1.tgz, r-oldrel (x86_64): FAIRmaterials_0.4.2.1.tgz
Old sources: FAIRmaterials archive

Linking:

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