Last updated on 2025-02-06 09:52:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 15.55 | 304.27 | 319.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 8.66 | 202.88 | 211.54 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 523.25 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 496.19 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 39.00 | 608.00 | 647.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 15.22 | 281.37 | 296.59 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 13.44 | 283.63 | 297.07 | OK | |
| r-release-macos-arm64 | 1.0.0 | 147.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 197.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 36.00 | 725.00 | 761.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.0 | 163.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 217.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 39.00 | 502.00 | 541.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [342s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(slendr)
The 'slim.exe' binary could not be found in your $PATH. Most of
the functionality of slendr will work without any issues but
you will not be able to simulate data with the `slim()` function.
If you want to run SLiM simulations, make sure to modify the $PATH
variable so that it points to the directory containing the slim
command-line program. One easy way to do this is to add this:
PATH="C:\path\to\directory\with\slim.exe"
to your C:\Users\<your username>\Documents\.Renviron file.
Alternatively, use the `slim_path` argument of the `slim()` function.
--------------------
A slendr Python (3.12) environment with the necessary versions of
msprime (1.3.3), tskit (0.5.8), pyslim (1.0.4), and tspop (0.0.2)
has not been found.
You can setup a pre-configured environment with all of slendr's Python
dependencies automatically by running the function `setup_env()`.
>
> test_check("slendr")
[ FAIL 1 | WARN 148 | SKIP 35 | PASS 138 ]
══ Skipped tests (35) ══════════════════════════════════════════════════════════
• !is_slendr_env_present() is TRUE (29): 'test-compilation.R:69:1',
'test-engines.R:1:1', 'test-extensions.R:1:1', 'test-future.R:15:1',
'test-geneflow.R:50:3', 'test-ibd-squashing.R:1:1', 'test-ibd.R:1:1',
'test-interaction-changes.R:3:1', 'test-manual-ts.R:1:1',
'test-msprime-geneflow.R:5:1', 'test-msprime-metadata.R:1:1',
'test-msprime.R:23:1', 'test-nonserialized.R:1:1', 'test-population.R:43:3',
'test-population.R:60:3', 'test-population.R:142:3',
'test-pure-msprime-vs-slendr.R:4:1', 'test-pure-slim-vs-slendr.R:4:1',
'test-resizes-locked.R:1:1', 'test-resizes.R:1:1', 'test-runners.R:1:1',
'test-sampling.R:3:1', 'test-simulation-runs.R:1:1',
'test-time-direction.R:1:1', 'test-trees.R:1:1',
'test-ts-ancestors-descendants.R:1:1', 'test-ts-pure-nonspatial.R:1:1',
'test-ts.R:1:1', 'test-tspop.R:1:1'
• !is_slendr_env_present() || !is_slim_present() is TRUE (1):
'test-ts-pure-spatial.R:1:1'
• Sys.info()[["sysname"]] == "Windows" is TRUE (5): 'test-compilation.R:12:3',
'test-compilation.R:19:3', 'test-compilation.R:28:3',
'test-compilation.R:37:3', 'test-serialization.R:73:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-naturalearth.R:4:3'): all three variants of the Natural Earth data can be downloaded ──
Error in `utils::download.file(url = sprintf("https://naturalearth.s3.amazonaws.com/%sm_physical/%s",
size, file), destfile = path, quiet = TRUE)`: download from 'https://naturalearth.s3.amazonaws.com/50m_physical/ne_50m_land.zip' failed
Backtrace:
▆
1. ├─utils::capture.output(...) at test-naturalearth.R:4:3
2. │ └─base::withVisible(...elt(i))
3. └─slendr::world(...)
4. └─utils::download.file(...)
[ FAIL 1 | WARN 148 | SKIP 35 | PASS 138 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64