treefit: The First Software for Quantitative Trajectory Inference
Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.
| Version: | 1.0.3 |
| Imports: | ggplot2, igraph, patchwork, pracma |
| Suggests: | Seurat, gridExtra, knitr, plotly, qpdf, rmarkdown, testthat |
| Published: | 2025-02-09 |
| DOI: | 10.32614/CRAN.package.treefit |
| Author: | Momoko Hayamizu 
[aut],
Kouhei Sutou
[aut, cre],
Ryohei Suzuki
[aut],
Hiromi Ishii
[aut] |
| Maintainer: | Kouhei Sutou <kou at clear-code.com> |
| BugReports: | https://github.com/hayamizu-lab/treefit-r/issues |
| License: | GPL (≥ 3) |
| URL: | https://hayamizu-lab.github.io/treefit-r/, https://github.com/hayamizu-lab/treefit-r/ |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README NEWS |
| In views: | Omics |
| CRAN checks: | treefit results |
Documentation:
| Reference manual: | treefit.pdf |
| Vignettes: |
Treefit - Getting started (source, R code) Treefit - Working with Seurat (source, R code) |
Downloads:
| Package source: | treefit_1.0.3.tar.gz |
| Windows binaries: | r-devel: treefit_1.0.3.zip, r-release: treefit_1.0.3.zip, r-oldrel: treefit_1.0.3.zip |
| macOS binaries: | r-devel (arm64): treefit_1.0.3.tgz, r-release (arm64): treefit_1.0.3.tgz, r-oldrel (arm64): treefit_1.0.3.tgz, r-devel (x86_64): treefit_1.0.3.tgz, r-release (x86_64): treefit_1.0.3.tgz, r-oldrel (x86_64): treefit_1.0.3.tgz |
| Old sources: | treefit archive |
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