nLTT: Calculate the NLTT Statistic
Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.
| Version: | 1.4.10 |
| Imports: | ape, coda, testit |
| Suggests: | TreeSim, DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat, DAISIE |
| Published: | 2025-05-06 |
| DOI: | 10.32614/CRAN.package.nLTT |
| Author: | Thijs Janzen [aut, cre],
Richèl J.C. Bilderbeek
 [aut],
Pedro Neves [ctb] |
| Maintainer: | Thijs Janzen <thijsjanzen at gmail.com> |
| BugReports: | https://github.com/thijsjanzen/nLTT/issues |
| License: | GPL-2 |
| URL: | https://github.com/thijsjanzen/nLTT |
| NeedsCompilation: | no |
| In views: | Phylogenetics |
| CRAN checks: | nLTT results |
Documentation:
| Reference manual: | nLTT.pdf |
| Vignettes: |
How to visualize nLTT values distributions (source, R code) nltt_diff functions (source, R code) How to plot multiple nLTTs and their average (source, R code) How to stretch an nLTT timepoints matrix (source, R code) Trees with a root edge (source, R code) Walkthrough (source, R code) |
Downloads:
| Package source: | nLTT_1.4.10.tar.gz |
| Windows binaries: | r-devel: nLTT_1.4.9.zip, r-release: nLTT_1.4.10.zip, r-oldrel: nLTT_1.4.9.zip |
| macOS binaries: | r-release (arm64): nLTT_1.4.10.tgz, r-oldrel (arm64): nLTT_1.4.10.tgz, r-release (x86_64): nLTT_1.4.10.tgz, r-oldrel (x86_64): nLTT_1.4.10.tgz |
| Old sources: | nLTT archive |
Reverse dependencies:
| Reverse suggests: | babette, mcbette, nodeSub, treestats |
Linking:
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