Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
| Version: | 1.8.3 |
| Depends: | Rcpp (≥ 0.12.10) |
| Imports: | parallel, naturalsort, stats, Matrix, RSpectra, jsonlite, methods |
| LinkingTo: | Rcpp |
| Suggests: | nloptr, ape |
| Published: | 2024-11-17 |
| DOI: | 10.32614/CRAN.package.castor |
| Author: | Stilianos Louca [aut, cre, cph] |
| Maintainer: | Stilianos Louca <louca.research at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | castor citation info |
| In views: | Phylogenetics |
| CRAN checks: | castor results |
| Reference manual: | castor.pdf |
| Package source: | castor_1.8.3.tar.gz |
| Windows binaries: | r-devel: castor_1.8.3.zip, r-release: castor_1.8.3.zip, r-oldrel: castor_1.8.3.zip |
| macOS binaries: | r-devel (arm64): castor_1.8.3.tgz, r-release (arm64): castor_1.8.3.tgz, r-oldrel (arm64): castor_1.8.3.tgz, r-devel (x86_64): castor_1.8.3.tgz, r-release (x86_64): castor_1.8.3.tgz, r-oldrel (x86_64): castor_1.8.3.tgz |
| Old sources: | castor archive |
| Reverse imports: | DAISIEprep, dispRity, LDM, nichevol, orthGS, phylosignalDB |
| Reverse suggests: | treestats |
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