Last updated on 2024-11-25 09:50:36 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| animint2 | 2 | 11 | |
| atime | 5 | 8 | |
| aum | 13 | ||
| binsegRcpp | 13 | ||
| directlabels | 13 | ||
| FLOPART | 13 | ||
| inlinedocs | 13 | ||
| LOPART | 13 | ||
| mlr3resampling | 13 | ||
| nc | 13 | ||
| neuroblastoma | 6 | 7 | |
| PeakError | 13 | ||
| PeakSegDisk | 13 | ||
| PeakSegDP | 13 | ||
| PeakSegJoint | 13 | ||
| PeakSegOptimal | 13 | ||
| penaltyLearning | 13 | ||
| plotHMM | 13 | ||
| WeightedROC | 10 | 3 |
Current CRAN status: NOTE: 2, OK: 11
Version: 2024.11.2
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
data 3.1Mb
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 5, OK: 8
Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Custom_Plots.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36048 bytes
Input file size = 36174 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31917
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31917
Output IDAT size = 31917 bytes (4131 bytes decrease)
Output file size = 31995 bytes (4179 bytes = 11.55% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37364 bytes
Input file size = 37490 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31932
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31932
Output IDAT size = 31932 bytes (5432 bytes decrease)
Output file size = 32010 bytes (5480 bytes = 14.62% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35004 bytes
Input file size = 35130 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31712
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31712
Output IDAT size = 31712 bytes (3292 bytes decrease)
Output file size = 31790 bytes (3340 bytes = 9.51% decrease)
--- finished re-building ‘Custom_Plots.Rmd’
--- re-building ‘Custom_References.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36904 bytes
Input file size = 37030 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31948
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31948
Output IDAT size = 31948 bytes (4956 bytes decrease)
Output file size = 32026 bytes (5004 bytes = 13.51% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50906 bytes
Input file size = 51056 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47939
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 47303
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 47303
Output IDAT size = 47303 bytes (3603 bytes decrease)
Output file size = 47381 bytes (3675 bytes = 7.20% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46450 bytes
Input file size = 46588 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41420
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41420
Output IDAT size = 41420 bytes (5030 bytes decrease)
Output file size = 41498 bytes (5090 bytes = 10.93% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47686 bytes
Input file size = 47824 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44650
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 44059
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 44059
Output IDAT size = 44059 bytes (3627 bytes decrease)
Output file size = 44137 bytes (3687 bytes = 7.71% decrease)
** Processing: figure/unnamed-chunk-6-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52976 bytes
Input file size = 53126 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49323
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49323
Output IDAT size = 49323 bytes (3653 bytes decrease)
Output file size = 49401 bytes (3725 bytes = 7.01% decrease)
--- finished re-building ‘Custom_References.Rmd’
--- re-building ‘Custom_Units.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29195 bytes
Input file size = 29309 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25147
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25147
Output IDAT size = 25147 bytes (4048 bytes decrease)
Output file size = 25225 bytes (4084 bytes = 13.93% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43847 bytes
Input file size = 43985 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37808
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37808
Output IDAT size = 37808 bytes (6039 bytes decrease)
Output file size = 37886 bytes (6099 bytes = 13.87% decrease)
** Processing: figure/unnamed-chunk-7-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32903 bytes
Input file size = 33029 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27616
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27616
Output IDAT size = 27616 bytes (5287 bytes decrease)
Output file size = 27694 bytes (5335 bytes = 16.15% decrease)
Warning in (function (..., deparse.level = 1) :
number of rows of result is not a multiple of vector length (arg 2)
** Processing: figure/unnamed-chunk-8-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42611 bytes
Input file size = 42749 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35563
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35563
Output IDAT size = 35563 bytes (7048 bytes decrease)
Output file size = 35641 bytes (7108 bytes = 16.63% decrease)
--- finished re-building ‘Custom_Units.Rmd’
--- re-building ‘cum_median.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27104 bytes
Input file size = 27218 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23075
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23075
Output IDAT size = 23075 bytes (4029 bytes decrease)
Output file size = 23153 bytes (4065 bytes = 14.93% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41061 bytes
Input file size = 41199 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38610
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38564
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38564
Output IDAT size = 38564 bytes (2497 bytes decrease)
Output file size = 38642 bytes (2557 bytes = 6.21% decrease)
--- finished re-building ‘cum_median.Rmd’
--- re-building ‘regex.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28144 bytes
Input file size = 28258 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26363
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26363
Output IDAT size = 26363 bytes (1781 bytes decrease)
Output file size = 26441 bytes (1817 bytes = 6.43% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36875 bytes
Input file size = 37001 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34904
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34904
Output IDAT size = 34904 bytes (1971 bytes decrease)
Output file size = 34982 bytes (2019 bytes = 5.46% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33169 bytes
Input file size = 33295 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30840
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30840
Output IDAT size = 30840 bytes (2329 bytes decrease)
Output file size = 30918 bytes (2377 bytes = 7.14% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33608 bytes
Input file size = 33734 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 31095
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 31095
Output IDAT size = 31095 bytes (2513 bytes decrease)
Output file size = 31173 bytes (2561 bytes = 7.59% decrease)
--- finished re-building ‘regex.Rmd’
--- re-building ‘sparse.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32322 bytes
Input file size = 32436 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27762
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27762
Output IDAT size = 27762 bytes (4560 bytes decrease)
Output file size = 27840 bytes (4596 bytes = 14.17% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37075 bytes
Input file size = 37201 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31241
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31241
Output IDAT size = 31241 bytes (5834 bytes decrease)
Output file size = 31319 bytes (5882 bytes = 15.81% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 49329 bytes
Input file size = 49479 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40013
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40013
Output IDAT size = 40013 bytes (9316 bytes decrease)
Output file size = 40091 bytes (9388 bytes = 18.97% decrease)
Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd)
Error: processing vignette 'sparse.Rmd' failed with diagnostics:
kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds
--- failed re-building ‘sparse.Rmd’
SUMMARY: processing the following file failed:
‘sparse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Custom_Plots.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39939 bytes
Input file size = 40065 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34698
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34698
Output IDAT size = 34698 bytes (5241 bytes decrease)
Output file size = 34776 bytes (5289 bytes = 13.20% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38579 bytes
Input file size = 38705 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32885
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32885
Output IDAT size = 32885 bytes (5694 bytes decrease)
Output file size = 32963 bytes (5742 bytes = 14.84% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38510 bytes
Input file size = 38636 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34646
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34646
Output IDAT size = 34646 bytes (3864 bytes decrease)
Output file size = 34724 bytes (3912 bytes = 10.13% decrease)
--- finished re-building ‘Custom_Plots.Rmd’
--- re-building ‘Custom_References.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36022 bytes
Input file size = 36148 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31472
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31472
Output IDAT size = 31472 bytes (4550 bytes decrease)
Output file size = 31550 bytes (4598 bytes = 12.72% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50515 bytes
Input file size = 50665 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47654
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 47056
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 47056
Output IDAT size = 47056 bytes (3459 bytes decrease)
Output file size = 47134 bytes (3531 bytes = 6.97% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46144 bytes
Input file size = 46282 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40773
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40773
Output IDAT size = 40773 bytes (5371 bytes decrease)
Output file size = 40851 bytes (5431 bytes = 11.73% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44780 bytes
Input file size = 44918 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41389
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41248
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 41248
Output IDAT size = 41248 bytes (3532 bytes decrease)
Output file size = 41326 bytes (3592 bytes = 8.00% decrease)
** Processing: figure/unnamed-chunk-6-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53735 bytes
Input file size = 53885 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52335
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49804
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 49804
Output IDAT size = 49804 bytes (3931 bytes decrease)
Output file size = 49882 bytes (4003 bytes = 7.43% decrease)
--- finished re-building ‘Custom_References.Rmd’
--- re-building ‘Custom_Units.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29263 bytes
Input file size = 29377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24991
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24991
Output IDAT size = 24991 bytes (4272 bytes decrease)
Output file size = 25069 bytes (4308 bytes = 14.66% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45609 bytes
Input file size = 45747 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38949
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38949
Output IDAT size = 38949 bytes (6660 bytes decrease)
Output file size = 39027 bytes (6720 bytes = 14.69% decrease)
** Processing: figure/unnamed-chunk-7-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33664 bytes
Input file size = 33790 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28354
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28354
Output IDAT size = 28354 bytes (5310 bytes decrease)
Output file size = 28432 bytes (5358 bytes = 15.86% decrease)
Warning in (function (..., deparse.level = 1) :
number of rows of result is not a multiple of vector length (arg 2)
** Processing: figure/unnamed-chunk-8-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41510 bytes
Input file size = 41648 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34892
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34892
Output IDAT size = 34892 bytes (6618 bytes decrease)
Output file size = 34970 bytes (6678 bytes = 16.03% decrease)
--- finished re-building ‘Custom_Units.Rmd’
--- re-building ‘cum_median.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27517 bytes
Input file size = 27631 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23510
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23510
Output IDAT size = 23510 bytes (4007 bytes decrease)
Output file size = 23588 bytes (4043 bytes = 14.63% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45271 bytes
Input file size = 45409 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40657
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40657
Output IDAT size = 40657 bytes (4614 bytes decrease)
Output file size = 40735 bytes (4674 bytes = 10.29% decrease)
--- finished re-building ‘cum_median.Rmd’
--- re-building ‘regex.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28021 bytes
Input file size = 28135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26166
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26166
Output IDAT size = 26166 bytes (1855 bytes decrease)
Output file size = 26244 bytes (1891 bytes = 6.72% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39886 bytes
Input file size = 40012 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 37720
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 37720
Output IDAT size = 37720 bytes (2166 bytes decrease)
Output file size = 37798 bytes (2214 bytes = 5.53% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33900 bytes
Input file size = 34026 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31195
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31195
Output IDAT size = 31195 bytes (2705 bytes decrease)
Output file size = 31273 bytes (2753 bytes = 8.09% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32057 bytes
Input file size = 32171 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29810
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29810
Output IDAT size = 29810 bytes (2247 bytes decrease)
Output file size = 29888 bytes (2283 bytes = 7.10% decrease)
--- finished re-building ‘regex.Rmd’
--- re-building ‘sparse.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33805 bytes
Input file size = 33931 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28582
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28582
Output IDAT size = 28582 bytes (5223 bytes decrease)
Output file size = 28660 bytes (5271 bytes = 15.53% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38063 bytes
Input file size = 38189 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31869
Output IDAT size = 31869 bytes (6194 bytes decrease)
Output file size = 31947 bytes (6242 bytes = 16.35% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54132 bytes
Input file size = 54282 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44540
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44540
Output IDAT size = 44540 bytes (9592 bytes decrease)
Output file size = 44618 bytes (9664 bytes = 17.80% decrease)
Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd)
Error: processing vignette 'sparse.Rmd' failed with diagnostics:
kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds
--- failed re-building ‘sparse.Rmd’
SUMMARY: processing the following file failed:
‘sparse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Custom_Plots.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32652 bytes
Input file size = 32766 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28658
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28658
Output IDAT size = 28658 bytes (3994 bytes decrease)
Output file size = 28736 bytes (4030 bytes = 12.30% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35439 bytes
Input file size = 35565 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30233
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30233
Output IDAT size = 30233 bytes (5206 bytes decrease)
Output file size = 30311 bytes (5254 bytes = 14.77% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31122 bytes
Input file size = 31236 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27469
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27469
Output IDAT size = 27469 bytes (3653 bytes decrease)
Output file size = 27547 bytes (3689 bytes = 11.81% decrease)
--- finished re-building ‘Custom_Plots.Rmd’
--- re-building ‘Custom_References.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27887 bytes
Input file size = 28001 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23889
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23889
Output IDAT size = 23889 bytes (3998 bytes decrease)
Output file size = 23967 bytes (4034 bytes = 14.41% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26776 bytes
Input file size = 26890 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677
Output IDAT size = 23677 bytes (3099 bytes decrease)
Output file size = 23755 bytes (3135 bytes = 11.66% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23597 bytes
Input file size = 23699 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21196
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21196
Output IDAT size = 21196 bytes (2401 bytes decrease)
Output file size = 21274 bytes (2425 bytes = 10.23% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26776 bytes
Input file size = 26890 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23677
Output IDAT size = 23677 bytes (3099 bytes decrease)
Output file size = 23755 bytes (3135 bytes = 11.66% decrease)
** Processing: figure/unnamed-chunk-6-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29179 bytes
Input file size = 29293 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26311
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26311
Output IDAT size = 26311 bytes (2868 bytes decrease)
Output file size = 26389 bytes (2904 bytes = 9.91% decrease)
--- finished re-building ‘Custom_References.Rmd’
--- re-building ‘Custom_Units.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29668 bytes
Input file size = 29782 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25324
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25324
Output IDAT size = 25324 bytes (4344 bytes decrease)
Output file size = 25402 bytes (4380 bytes = 14.71% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47557 bytes
Input file size = 47695 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39493
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39493
Output IDAT size = 39493 bytes (8064 bytes decrease)
Output file size = 39571 bytes (8124 bytes = 17.03% decrease)
** Processing: figure/unnamed-chunk-7-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34300 bytes
Input file size = 34426 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28722
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28722
Output IDAT size = 28722 bytes (5578 bytes decrease)
Output file size = 28800 bytes (5626 bytes = 16.34% decrease)
Warning in (function (..., deparse.level = 1) :
number of rows of result is not a multiple of vector length (arg 2)
** Processing: figure/unnamed-chunk-8-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43946 bytes
Input file size = 44084 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36460
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36460
Output IDAT size = 36460 bytes (7486 bytes decrease)
Output file size = 36538 bytes (7546 bytes = 17.12% decrease)
--- finished re-building ‘Custom_Units.Rmd’
--- re-building ‘cum_median.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25490 bytes
Input file size = 25604 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22276
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22276
Output IDAT size = 22276 bytes (3214 bytes decrease)
Output file size = 22354 bytes (3250 bytes = 12.69% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40983 bytes
Input file size = 41121 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38438
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38157
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 38157
Output IDAT size = 38157 bytes (2826 bytes decrease)
Output file size = 38235 bytes (2886 bytes = 7.02% decrease)
--- finished re-building ‘cum_median.Rmd’
--- re-building ‘regex.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28563 bytes
Input file size = 28677 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26540
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26540
Output IDAT size = 26540 bytes (2023 bytes decrease)
Output file size = 26618 bytes (2059 bytes = 7.18% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36376 bytes
Input file size = 36502 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34322
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34322
Output IDAT size = 34322 bytes (2054 bytes decrease)
Output file size = 34400 bytes (2102 bytes = 5.76% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34272 bytes
Input file size = 34398 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32049
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32049
Output IDAT size = 32049 bytes (2223 bytes decrease)
Output file size = 32127 bytes (2271 bytes = 6.60% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30371 bytes
Input file size = 30485 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27772
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27772
Output IDAT size = 27772 bytes (2599 bytes decrease)
Output file size = 27850 bytes (2635 bytes = 8.64% decrease)
--- finished re-building ‘regex.Rmd’
--- re-building ‘sparse.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31306 bytes
Input file size = 31420 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26732
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26732
Output IDAT size = 26732 bytes (4574 bytes decrease)
Output file size = 26810 bytes (4610 bytes = 14.67% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36229 bytes
Input file size = 36355 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30490
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30490
Output IDAT size = 30490 bytes (5739 bytes decrease)
Output file size = 30568 bytes (5787 bytes = 15.92% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46672 bytes
Input file size = 46810 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39675
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39675
Output IDAT size = 39675 bytes (6997 bytes decrease)
Output file size = 39753 bytes (7057 bytes = 15.08% decrease)
Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd)
Error: processing vignette 'sparse.Rmd' failed with diagnostics:
kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds
--- failed re-building ‘sparse.Rmd’
SUMMARY: processing the following file failed:
‘sparse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2024.11.15
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if(require(testthat))test_check("atime")
Loading required package: testthat
Loading required package: atime
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 54 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-CRAN.R:502:3'): result=fun works ─────────────────────────────
vec.mat.pred$prediction not equal to data.table(...).
Different number of rows
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 54 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Custom_Plots.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33312 bytes
Input file size = 33438 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28160
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28160
Output IDAT size = 28160 bytes (5152 bytes decrease)
Output file size = 28238 bytes (5200 bytes = 15.55% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35367 bytes
Input file size = 35493 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30814
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30814
Output IDAT size = 30814 bytes (4553 bytes decrease)
Output file size = 30892 bytes (4601 bytes = 12.96% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33430 bytes
Input file size = 33556 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30275
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30275
Output IDAT size = 30275 bytes (3155 bytes decrease)
Output file size = 30353 bytes (3203 bytes = 9.55% decrease)
--- finished re-building ‘Custom_Plots.Rmd’
--- re-building ‘Custom_References.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29828 bytes
Input file size = 29942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24412
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24412
Output IDAT size = 24412 bytes (5416 bytes decrease)
Output file size = 24490 bytes (5452 bytes = 18.21% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31251 bytes
Input file size = 31365 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27684
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27684
Output IDAT size = 27684 bytes (3567 bytes decrease)
Output file size = 27762 bytes (3603 bytes = 11.49% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24832 bytes
Input file size = 24946 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22376
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22376
Output IDAT size = 22376 bytes (2456 bytes decrease)
Output file size = 22454 bytes (2492 bytes = 9.99% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27273 bytes
Input file size = 27387 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24148
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24148
Output IDAT size = 24148 bytes (3125 bytes decrease)
Output file size = 24226 bytes (3161 bytes = 11.54% decrease)
** Processing: figure/unnamed-chunk-6-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34228 bytes
Input file size = 34354 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30581
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30581
Output IDAT size = 30581 bytes (3647 bytes decrease)
Output file size = 30659 bytes (3695 bytes = 10.76% decrease)
--- finished re-building ‘Custom_References.Rmd’
--- re-building ‘Custom_Units.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31169 bytes
Input file size = 31283 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27018
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27018
Output IDAT size = 27018 bytes (4151 bytes decrease)
Output file size = 27096 bytes (4187 bytes = 13.38% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47979 bytes
Input file size = 48117 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41088
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41088
Output IDAT size = 41088 bytes (6891 bytes decrease)
Output file size = 41166 bytes (6951 bytes = 14.45% decrease)
** Processing: figure/unnamed-chunk-7-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34054 bytes
Input file size = 34180 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28521
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28521
Output IDAT size = 28521 bytes (5533 bytes decrease)
Output file size = 28599 bytes (5581 bytes = 16.33% decrease)
Warning in (function (..., deparse.level = 1) :
number of rows of result is not a multiple of vector length (arg 2)
** Processing: figure/unnamed-chunk-8-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39632 bytes
Input file size = 39758 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33303
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33303
Output IDAT size = 33303 bytes (6329 bytes decrease)
Output file size = 33381 bytes (6377 bytes = 16.04% decrease)
--- finished re-building ‘Custom_Units.Rmd’
--- re-building ‘cum_median.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26180 bytes
Input file size = 26294 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22759
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22759
Output IDAT size = 22759 bytes (3421 bytes decrease)
Output file size = 22837 bytes (3457 bytes = 13.15% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43251 bytes
Input file size = 43389 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41658
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 40454
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 40454
Output IDAT size = 40454 bytes (2797 bytes decrease)
Output file size = 40532 bytes (2857 bytes = 6.58% decrease)
--- finished re-building ‘cum_median.Rmd’
--- re-building ‘regex.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27768 bytes
Input file size = 27882 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26090
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 26090
Output IDAT size = 26090 bytes (1678 bytes decrease)
Output file size = 26168 bytes (1714 bytes = 6.15% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35566 bytes
Input file size = 35692 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33411
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33411
Output IDAT size = 33411 bytes (2155 bytes decrease)
Output file size = 33489 bytes (2203 bytes = 6.17% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31659 bytes
Input file size = 31773 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29552
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29552
Output IDAT size = 29552 bytes (2107 bytes decrease)
Output file size = 29630 bytes (2143 bytes = 6.74% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30438 bytes
Input file size = 30552 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27919
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27919
Output IDAT size = 27919 bytes (2519 bytes decrease)
Output file size = 27997 bytes (2555 bytes = 8.36% decrease)
--- finished re-building ‘regex.Rmd’
--- re-building ‘sparse.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30238 bytes
Input file size = 30352 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25939
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25939
Output IDAT size = 25939 bytes (4299 bytes decrease)
Output file size = 26017 bytes (4335 bytes = 14.28% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36104 bytes
Input file size = 36230 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30513
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30513
Output IDAT size = 30513 bytes (5591 bytes decrease)
Output file size = 30591 bytes (5639 bytes = 15.56% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41813 bytes
Input file size = 41951 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35417
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35417
Output IDAT size = 35417 bytes (6396 bytes decrease)
Output file size = 35495 bytes (6456 bytes = 15.39% decrease)
Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd)
Error: processing vignette 'sparse.Rmd' failed with diagnostics:
kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds
--- failed re-building ‘sparse.Rmd’
SUMMARY: processing the following file failed:
‘sparse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2024.11.15
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Custom_Plots.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35858 bytes
Input file size = 35984 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32054
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32054
Output IDAT size = 32054 bytes (3804 bytes decrease)
Output file size = 32132 bytes (3852 bytes = 10.70% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39673 bytes
Input file size = 39799 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33882
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33882
Output IDAT size = 33882 bytes (5791 bytes decrease)
Output file size = 33960 bytes (5839 bytes = 14.67% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37393 bytes
Input file size = 37519 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33570
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33570
Output IDAT size = 33570 bytes (3823 bytes decrease)
Output file size = 33648 bytes (3871 bytes = 10.32% decrease)
--- finished re-building ‘Custom_Plots.Rmd’
--- re-building ‘Custom_References.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37226 bytes
Input file size = 37352 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31770
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31770
Output IDAT size = 31770 bytes (5456 bytes decrease)
Output file size = 31848 bytes (5504 bytes = 14.74% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50296 bytes
Input file size = 50446 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46973
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 46598
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 46598
Output IDAT size = 46598 bytes (3698 bytes decrease)
Output file size = 46676 bytes (3770 bytes = 7.47% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47386 bytes
Input file size = 47524 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41534
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41534
Output IDAT size = 41534 bytes (5852 bytes decrease)
Output file size = 41612 bytes (5912 bytes = 12.44% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47525 bytes
Input file size = 47663 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44142
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43824
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 43824
Output IDAT size = 43824 bytes (3701 bytes decrease)
Output file size = 43902 bytes (3761 bytes = 7.89% decrease)
** Processing: figure/unnamed-chunk-6-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51246 bytes
Input file size = 51396 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50132
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 47694
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 47694
Output IDAT size = 47694 bytes (3552 bytes decrease)
Output file size = 47772 bytes (3624 bytes = 7.05% decrease)
--- finished re-building ‘Custom_References.Rmd’
--- re-building ‘Custom_Units.Rmd’ using knitr
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28947 bytes
Input file size = 29061 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24833
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24833
Output IDAT size = 24833 bytes (4114 bytes decrease)
Output file size = 24911 bytes (4150 bytes = 14.28% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43679 bytes
Input file size = 43817 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37454
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37454
Output IDAT size = 37454 bytes (6225 bytes decrease)
Output file size = 37532 bytes (6285 bytes = 14.34% decrease)
** Processing: figure/unnamed-chunk-7-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32550 bytes
Input file size = 32664 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27377
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27377
Output IDAT size = 27377 bytes (5173 bytes decrease)
Output file size = 27455 bytes (5209 bytes = 15.95% decrease)
Warning in (function (..., deparse.level = 1) :
number of rows of result is not a multiple of vector length (arg 2)
** Processing: figure/unnamed-chunk-8-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41043 bytes
Input file size = 41181 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34589
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34589
Output IDAT size = 34589 bytes (6454 bytes decrease)
Output file size = 34667 bytes (6514 bytes = 15.82% decrease)
--- finished re-building ‘Custom_Units.Rmd’
--- re-building ‘cum_median.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27356 bytes
Input file size = 27470 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23636
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23636
Output IDAT size = 23636 bytes (3720 bytes decrease)
Output file size = 23714 bytes (3756 bytes = 13.67% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42455 bytes
Input file size = 42593 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40556
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39950
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39950
Output IDAT size = 39950 bytes (2505 bytes decrease)
Output file size = 40028 bytes (2565 bytes = 6.02% decrease)
--- finished re-building ‘cum_median.Rmd’
--- re-building ‘regex.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31718 bytes
Input file size = 31832 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29950
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29950
Output IDAT size = 29950 bytes (1768 bytes decrease)
Output file size = 30028 bytes (1804 bytes = 5.67% decrease)
** Processing: figure/unnamed-chunk-2-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38687 bytes
Input file size = 38813 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 36478
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 36478
Output IDAT size = 36478 bytes (2209 bytes decrease)
Output file size = 36556 bytes (2257 bytes = 5.82% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33854 bytes
Input file size = 33980 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31559
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31559
Output IDAT size = 31559 bytes (2295 bytes decrease)
Output file size = 31637 bytes (2343 bytes = 6.90% decrease)
** Processing: figure/unnamed-chunk-5-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33015 bytes
Input file size = 33141 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30375
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30375
Output IDAT size = 30375 bytes (2640 bytes decrease)
Output file size = 30453 bytes (2688 bytes = 8.11% decrease)
--- finished re-building ‘regex.Rmd’
--- re-building ‘sparse.Rmd’ using knitr
** Processing: figure/unnamed-chunk-1-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33434 bytes
Input file size = 33560 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28632
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28632
Output IDAT size = 28632 bytes (4802 bytes decrease)
Output file size = 28710 bytes (4850 bytes = 14.45% decrease)
** Processing: figure/unnamed-chunk-3-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35111 bytes
Input file size = 35237 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29999
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29999
Output IDAT size = 29999 bytes (5112 bytes decrease)
Output file size = 30077 bytes (5160 bytes = 14.64% decrease)
** Processing: figure/unnamed-chunk-4-1.png
504x504 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52845 bytes
Input file size = 52995 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44206
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44206
Output IDAT size = 44206 bytes (8639 bytes decrease)
Output file size = 44284 bytes (8711 bytes = 16.44% decrease)
Quitting from lines 155-161 [unnamed-chunk-5] (sparse.Rmd)
Error: processing vignette 'sparse.Rmd' failed with diagnostics:
kilobytes is not a valid unit; argument names of predict must be one of these valid units: length, seconds
--- failed re-building ‘sparse.Rmd’
SUMMARY: processing the following file failed:
‘sparse.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 2023.9.3
Check: installed package size
Result: NOTE
installed size is 7.9Mb
sub-directories of 1Mb or more:
data 7.8Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 2020.1.31
Check: Rd files
Result: NOTE
checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup?
10 | integer/numeric with values all in {0=negative,1=positive} or
| ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
| ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64