Last updated on 2025-03-19 08:52:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3.5 | 6.24 | 72.49 | 78.73 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3.5 | 4.23 | 51.36 | 55.59 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3.5 | 131.20 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3.5 | 163.75 | ERROR | |||
| r-devel-macos-arm64 | 0.1.3.5 | 116.00 | OK | |||
| r-devel-macos-x86_64 | 0.1.3.5 | 220.00 | NOTE | |||
| r-devel-windows-x86_64 | 0.1.3.5 | 9.00 | 87.00 | 96.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.3.5 | 5.64 | 69.99 | 75.63 | ERROR | |
| r-release-linux-x86_64 | 0.1.3.5 | 6.44 | 69.38 | 75.82 | ERROR | |
| r-release-macos-arm64 | 0.1.3.5 | 127.00 | OK | |||
| r-release-macos-x86_64 | 0.1.3.5 | 220.00 | OK | |||
| r-release-windows-x86_64 | 0.1.3.5 | 9.00 | 87.00 | 96.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.3.5 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.3.5 | 230.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.3.5 | 11.00 | 108.00 | 119.00 | ERROR |
Version: 0.1.3.5
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘summary.spjctest.R’ ‘summary.spqtest.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in ‘spqdep-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 267.52, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 77.802, df = 81, p-value = 0.5801
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 292.57, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 227.94, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 292.6, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 79.315, df = 81, p-value = 0.5322
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 267.52, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 77.802, df = 81, p-value = 0.5801
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘user-guide.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29661 bytes
Input file size = 29775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21863
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21863
Output IDAT size = 21863 bytes (7798 bytes decrease)
Output file size = 21941 bytes (7834 bytes = 26.31% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29819 bytes
Input file size = 29933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
Output IDAT size = 27237 bytes (2582 bytes decrease)
Output file size = 27315 bytes (2618 bytes = 8.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28643 bytes
Input file size = 28757 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
Output IDAT size = 25872 bytes (2771 bytes decrease)
Output file size = 25950 bytes (2807 bytes = 9.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28198 bytes
Input file size = 28312 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20586
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20586
Output IDAT size = 20586 bytes (7612 bytes decrease)
Output file size = 20664 bytes (7648 bytes = 27.01% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21410 bytes
Input file size = 21512 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16015
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16015
Output IDAT size = 16015 bytes (5395 bytes decrease)
Output file size = 16093 bytes (5419 bytes = 25.19% decrease)
Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'units' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1)
2. └─spqdep::m.surround(...)
3. └─base::rbind(mdtms, rowds)
4. └─units (local) rbind(deparse.level, ...)
5. └─base::units(dots[[1]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in ‘spqdep-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 286.1, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 78.788, df = 81, p-value = 0.5489
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 313.64, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 235.56, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 310.5, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 73.455, df = 81, p-value = 0.7121
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 286.1, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 78.788, df = 81, p-value = 0.5489
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘user-guide.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29589 bytes
Input file size = 29703 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21934
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21934
Output IDAT size = 21934 bytes (7655 bytes decrease)
Output file size = 22012 bytes (7691 bytes = 25.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29819 bytes
Input file size = 29933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
Output IDAT size = 27237 bytes (2582 bytes decrease)
Output file size = 27315 bytes (2618 bytes = 8.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28643 bytes
Input file size = 28757 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
Output IDAT size = 25872 bytes (2771 bytes decrease)
Output file size = 25950 bytes (2807 bytes = 9.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27853 bytes
Input file size = 27967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20346
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20346
Output IDAT size = 20346 bytes (7507 bytes decrease)
Output file size = 20424 bytes (7543 bytes = 26.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21511 bytes
Input file size = 21613 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16185
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16185
Output IDAT size = 16185 bytes (5326 bytes decrease)
Output file size = 16263 bytes (5350 bytes = 24.75% decrease)
Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'units' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1)
2. └─spqdep::m.surround(...)
3. └─base::rbind(mdtms, rowds)
4. └─units (local) rbind(deparse.level, ...)
5. └─base::units(dots[[1]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in ‘spqdep-Ex.R’ failed
The error most likely occurred in:
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 261.77, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 78.631, df = 81, p-value = 0.5539
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 276.33, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 238.87, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 285.55, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 72.942, df = 81, p-value = 0.7266
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 261.77, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 78.631, df = 81, p-value = 0.5539
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘user-guide.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29365 bytes
Input file size = 29479 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21293
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21293
Output IDAT size = 21293 bytes (8072 bytes decrease)
Output file size = 21371 bytes (8108 bytes = 27.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29738 bytes
Input file size = 29852 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111
Output IDAT size = 27111 bytes (2627 bytes decrease)
Output file size = 27189 bytes (2663 bytes = 8.92% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28569 bytes
Input file size = 28683 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713
Output IDAT size = 25713 bytes (2856 bytes decrease)
Output file size = 25791 bytes (2892 bytes = 10.08% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27899 bytes
Input file size = 28013 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19643
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19643
Output IDAT size = 19643 bytes (8256 bytes decrease)
Output file size = 19721 bytes (8292 bytes = 29.60% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21344 bytes
Input file size = 21446 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15199
Output IDAT size = 15199 bytes (6145 bytes decrease)
Output file size = 15277 bytes (6169 bytes = 28.77% decrease)
Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'units' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1)
2. └─spqdep::m.surround(...)
3. └─base::rbind(mdtms, rowds)
4. └─units (local) rbind(deparse.level, ...)
5. └─base::units(dots[[1]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in ‘spqdep-Ex.R’ failed
The error most likely occurred in:
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 263.92, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 76.423, df = 81, p-value = 0.6232
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 291.46, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 215.39, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 290.69, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 81.871, df = 81, p-value = 0.452
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 263.92, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 76.423, df = 81, p-value = 0.6232
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘user-guide.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28861 bytes
Input file size = 28975 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20889
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20889
Output IDAT size = 20889 bytes (7972 bytes decrease)
Output file size = 20967 bytes (8008 bytes = 27.64% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29738 bytes
Input file size = 29852 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111
Output IDAT size = 27111 bytes (2627 bytes decrease)
Output file size = 27189 bytes (2663 bytes = 8.92% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28569 bytes
Input file size = 28683 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713
Output IDAT size = 25713 bytes (2856 bytes decrease)
Output file size = 25791 bytes (2892 bytes = 10.08% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27839 bytes
Input file size = 27953 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19630
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19630
Output IDAT size = 19630 bytes (8209 bytes decrease)
Output file size = 19708 bytes (8245 bytes = 29.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21502 bytes
Input file size = 21604 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15356
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15356
Output IDAT size = 15356 bytes (6146 bytes decrease)
Output file size = 15434 bytes (6170 bytes = 28.56% decrease)
Quitting from lines 273-279 [unnamed-chunk-11] (user-guide.Rmd)
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in 'spqdep-Ex.R' failed
The error most likely occurred in:
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 270.22, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 52.763, df = 81, p-value = 0.9936
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 284.76, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 216.03, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 287.31, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 59.633, df = 81, p-value = 0.9641
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 270.22, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 52.763, df = 81, p-value = 0.9936
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'user-guide.Rmd' using rmarkdown
Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'units' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1)
2. └─spqdep::m.surround(...)
3. └─base::rbind(mdtms, rowds)
4. └─units (local) rbind(deparse.level, ...)
5. └─base::units(dots[[1]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building 'user-guide.Rmd'
SUMMARY: processing the following file failed:
'user-guide.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in ‘spqdep-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 273.22, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 61.692, df = 81, p-value = 0.9457
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 299.95, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 223.43, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 300.17, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 61.509, df = 81, p-value = 0.9475
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 273.22, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 61.692, df = 81, p-value = 0.9457
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘user-guide.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29818 bytes
Input file size = 29932 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21943
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21943
Output IDAT size = 21943 bytes (7875 bytes decrease)
Output file size = 22021 bytes (7911 bytes = 26.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29819 bytes
Input file size = 29933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
Output IDAT size = 27237 bytes (2582 bytes decrease)
Output file size = 27315 bytes (2618 bytes = 8.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28643 bytes
Input file size = 28757 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
Output IDAT size = 25872 bytes (2771 bytes decrease)
Output file size = 25950 bytes (2807 bytes = 9.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28030 bytes
Input file size = 28144 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20452
Output IDAT size = 20452 bytes (7578 bytes decrease)
Output file size = 20530 bytes (7614 bytes = 27.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21651 bytes
Input file size = 21753 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16260
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16260
Output IDAT size = 16260 bytes (5391 bytes decrease)
Output file size = 16338 bytes (5415 bytes = 24.89% decrease)
Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'units' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1)
2. └─spqdep::m.surround(...)
3. └─base::rbind(mdtms, rowds)
4. └─units (local) rbind(deparse.level, ...)
5. └─base::units(dots[[1]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in ‘spqdep-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 268.59, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 80.613, df = 81, p-value = 0.4912
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 283.51, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 232.97, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 292.51, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 92.34, df = 81, p-value = 0.1829
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 268.59, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 80.613, df = 81, p-value = 0.4912
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘user-guide.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29009 bytes
Input file size = 29123 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21391
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21391
Output IDAT size = 21391 bytes (7618 bytes decrease)
Output file size = 21469 bytes (7654 bytes = 26.28% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29819 bytes
Input file size = 29933 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237
Output IDAT size = 27237 bytes (2582 bytes decrease)
Output file size = 27315 bytes (2618 bytes = 8.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28643 bytes
Input file size = 28757 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872
Output IDAT size = 25872 bytes (2771 bytes decrease)
Output file size = 25950 bytes (2807 bytes = 9.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28225 bytes
Input file size = 28339 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20562
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20562
Output IDAT size = 20562 bytes (7663 bytes decrease)
Output file size = 20640 bytes (7699 bytes = 27.17% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21285 bytes
Input file size = 21387 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15915
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15915
Output IDAT size = 15915 bytes (5370 bytes decrease)
Output file size = 15993 bytes (5394 bytes = 25.22% decrease)
Quitting from lines 273-279 [unnamed-chunk-11] (user-guide.Rmd)
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "NULL"
--- failed re-building ‘user-guide.Rmd’
SUMMARY: processing the following file failed:
‘user-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in 'spqdep-Ex.R' failed
The error most likely occurred in:
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 276.78, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 68.01, df = 81, p-value = 0.848
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 300.07, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 206.28, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 297.79, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 83.3, df = 81, p-value = 0.4085
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 276.78, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 68.01, df = 81, p-value = 0.848
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.1.3.5
Check: examples
Result: ERROR
Running examples in 'spqdep-Ex.R' failed
The error most likely occurred in:
> ### Name: Q.map.test
> ### Title: Compute the QE and QI tests of Equivalence and Independence
> ### between maps
> ### Aliases: Q.map.test
>
> ### ** Examples
>
>
> # Case 1:
> N <- 200
> cx <- runif(N)
> cy <- runif(N)
> x <- cbind(cx,cy)
> listw <- spdep::nb2listw(spdep::knn2nb(
+ spdep::knearneigh(cbind(cx,cy), k = 4)))
> p <- c(1/6, 3/6, 2/6)
> rho = 0.5
> QY1 <- dgp.spq(p = p, listw = listw, rho = rho)
> rho = 0.8
> QY2 <- dgp.spq(p = p, listw = listw, rho = rho)
> dt = data.frame(QY1,QY2)
> m = 3
> r = 1
> formula <- ~ QY1 + QY2
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 263.4, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 85.005, df = 81, p-value = 0.3588
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap, ci=.6)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> plot(qmap[[1]]$mh)
> summary(qmap[[1]]$mh)
Characteristics of m-surrounding:
Number of m-surrounding (R): 90
Length of m-surrounding (m): 3
Number no-symbolized observations: 12
List of no-symbolized observations:
8 62 66 69 80 85 117 122 130 146 191 199
List of the degree overlaping:
There are 2 m-surrounding that have intersection with 0 m-surrounding
There are 12 m-surrounding that have intersection with 1 m-surrounding
There are 76 m-surrounding that have intersection with 2 m-surrounding
Mean degree of overlaping: 1.8222
>
> control <- list(dtmaxknn = 20)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="permutations", control = control)
Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, :
The ratio between the number of symbolized observations and the number of symbols is lower than 5.
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QE = 280.7, df = 26, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: permutations
Ratio Symbolized observations/Num symbols = 3.44
data: QY1 and QY2
QI = 236.38, df = 676, p-value = 1
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
Warning: No shared levels found between `names(values)` of the manual scale and the
data's fill values.
> plot(qmap[[1]]$mh)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations")
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QE = 290.14, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9.9
data: QY1 and QY2
QI = 87.289, df = 81, p-value = 0.2967
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
> control <- list(dtmaxknn = 10)
> qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r,
+ type ="combinations", control = control)
> print(qmap)
[[1]]
Q-Map test of Equivalence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QE = 263.4, df = 9, p-value < 2.2e-16
alternative hypothesis: two.sided
[[2]]
Q-Map test of Independence for qualitative data.
Symbols type: combinations
Ratio Symbolized observations/Num symbols = 9
data: QY1 and QY2
QI = 85.005, df = 81, p-value = 0.3588
alternative hypothesis: two.sided
attr(,"class")
[1] "qmap" "list"
> plot(qmap)
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
Warning: Use of `data$symb` is discouraged.
ℹ Use `symb` instead.
>
> # Case 2:
> data(provinces_spain)
> # sf::sf_use_s2(FALSE)
> m = 3
> r = 1
>
> provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100)
> levels(provinces_spain$Mal2Fml) = c("men","woman")
> provinces_spain$Coast <- factor(provinces_spain$Coast)
> levels(provinces_spain$Coast) = c("no","yes")
> formula <- ~ Coast + Mal2Fml
> qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r,
+ type ="combinations")
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "NULL"
Calls: Q.map.test -> m.surround -> rbind -> rbind -> units
Execution halted
Flavor: r-oldrel-windows-x86_64