Last updated on 2025-04-01 09:55:26 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| faviconPlease | 15 | ||
| OmicNavigator | 15 | ||
| workflowr | 1 | 4 | 10 |
Current CRAN status: OK: 15
Current CRAN status: OK: 15
Current CRAN status: ERROR: 1, NOTE: 4, OK: 10
Version: 1.7.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
wflow_build.Rd: rmarkdown
wflow_git_commit.Rd: git2r
wflow_git_config.Rd: git2r
wflow_git_pull.Rd: git2r
wflow_git_push.Rd: git2r
wflow_post_knit.Rd: rmarkdown
wflow_pre_knit.Rd: rmarkdown
wflow_pre_processor.Rd: rmarkdown
wflow_remove.Rd: git2r
wflow_rename.Rd: git2r
wflow_start.Rd: git2r
wflow_status.Rd: git2r
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 1.7.1
Check: tests
Result: ERROR
Running ‘system-info.R’
Running ‘testthat.R’ [100s/118s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("workflowr")
This is workflowr version 1.7.1
Run ?workflowr for help getting started
>
> test_check("workflowr")
[ FAIL 1 | WARN 0 | SKIP 169 | PASS 1223 ]
══ Skipped tests (169) ═════════════════════════════════════════════════════════
• Manual test (1): 'test-wflow_git_push_pull.R:428:3'
• On CRAN (151): 'test-build_rmd.R:33:3', 'test-build_rmd.R:48:3',
'test-build_rmd.R:57:3', 'test-build_rmd_external.R:36:3',
'test-build_rmd_external.R:47:3', 'test-build_rmd_external.R:57:3',
'test-build_rmd_external.R:74:3', 'test-build_rmd_external.R:88:3',
'test-build_rmd_external.R:98:3', 'test-fig_path_ext.R:40:3',
'test-fig_path_ext.R:91:3', 'test-git.R:106:3', 'test-glob.R:102:3',
'test-glob.R:139:3', 'test-integrations.R:13:3',
'test-obtain_existing_path.R:65:3', 'test-report.R:167:3',
'test-report.R:187:3', 'test-report.R:225:3', 'test-report.R:289:3',
'test-report.R:1178:3', 'test-report.R:1196:3', 'test-report.R:1216:3',
'test-report.R:1236:3', 'test-report.R:1285:3',
'test-suppress_report.R:50:3', 'test-suppress_report.R:81:3',
'test-utility.R:565:3', 'test-utility.R:664:3',
'test-vig-getting-started.R:33:3', 'test-vig-getting-started.R:43:3',
'test-vig-getting-started.R:58:3', 'test-vig-getting-started.R:72:3',
'test-vig-getting-started.R:84:3', 'test-vig-gitlab.R:26:3',
'test-vig-gitlab.R:48:3', 'test-wflow_build.R:22:3',
'test-wflow_build.R:50:3', 'test-wflow_build.R:80:3',
'test-wflow_build.R:112:3', 'test-wflow_build.R:131:3',
'test-wflow_build.R:153:3', 'test-wflow_build.R:180:3',
'test-wflow_build.R:204:3', 'test-wflow_build.R:223:3',
'test-wflow_build.R:232:3', 'test-wflow_build.R:243:3',
'test-wflow_build.R:275:3', 'test-wflow_build.R:309:3',
'test-wflow_build.R:349:3', 'test-wflow_build.R:359:3',
'test-wflow_build.R:387:3', 'test-wflow_git_commit.R:216:3',
'test-wflow_git_commit.R:259:3', 'test-wflow_git_commit.R:291:3',
'test-wflow_git_config.R:12:3', 'test-wflow_git_config.R:29:3',
'test-wflow_git_config.R:44:3', 'test-wflow_git_config.R:59:3',
'test-wflow_git_config.R:75:3', 'test-wflow_html.R:7:3',
'test-wflow_html.R:27:3', 'test-wflow_html.R:47:3', 'test-wflow_html.R:69:3',
'test-wflow_html.R:92:3', 'test-wflow_html.R:117:3',
'test-wflow_html.R:134:3', 'test-wflow_html.R:176:3',
'test-wflow_html.R:194:3', 'test-wflow_html.R:218:3',
'test-wflow_html.R:255:3', 'test-wflow_html.R:283:3',
'test-wflow_html.R:313:3', 'test-wflow_html.R:349:3',
'test-wflow_html.R:365:3', 'test-wflow_html.R:385:3',
'test-wflow_html.R:404:3', 'test-wflow_html.R:428:3',
'test-wflow_html.R:456:3', 'test-wflow_html.R:493:3',
'test-wflow_html.R:541:3', 'test-wflow_html.R:614:3',
'test-wflow_html.R:625:3', 'test-wflow_html.R:642:3',
'test-wflow_html.R:654:3', 'test-wflow_html.R:666:3',
'test-wflow_open.R:44:3', 'test-wflow_open.R:182:3',
'test-wflow_options.R:23:3', 'test-wflow_publish.R:30:3',
'test-wflow_publish.R:46:3', 'test-wflow_publish.R:75:3',
'test-wflow_publish.R:91:3', 'test-wflow_publish.R:118:3',
'test-wflow_publish.R:130:3', 'test-wflow_publish.R:175:3',
'test-wflow_publish.R:207:3', 'test-wflow_publish.R:247:3',
'test-wflow_publish.R:266:3', 'test-wflow_publish.R:288:3',
'test-wflow_publish.R:298:3', 'test-wflow_publish.R:322:3',
'test-wflow_publish.R:334:3', 'test-wflow_publish.R:351:3',
'test-wflow_publish.R:367:3', 'test-wflow_publish.R:388:3',
'test-wflow_quickstart.R:11:3', 'test-wflow_quickstart.R:32:3',
'test-wflow_quickstart.R:59:3', 'test-wflow_quickstart.R:79:3',
'test-wflow_quickstart.R:105:3', 'test-wflow_quickstart.R:127:3',
'test-wflow_quickstart.R:153:3', 'test-wflow_quickstart.R:183:3',
'test-wflow_quickstart.R:205:3', 'test-wflow_quickstart.R:340:3',
'test-wflow_remove.R:65:3', 'test-wflow_remove.R:88:3',
'test-wflow_remove.R:304:3', 'test-wflow_rename.R:159:3',
'test-wflow_site.R:29:3', 'test-wflow_site.R:46:3',
'test-wflow_start.R:206:3', 'test-wflow_start_rstudio.R:146:3',
'test-wflow_status.R:93:3', 'test-wflow_status.R:105:3',
'test-wflow_status.R:126:3', 'test-wflow_status.R:147:3',
'test-wflow_status.R:168:3', 'test-wflow_status.R:178:3',
'test-wflow_status.R:236:3', 'test-wflow_toc.R:7:3', 'test-wflow_toc.R:23:3',
'test-wflow_toc.R:38:3', 'test-wflow_toc.R:70:3', 'test-wflow_toc.R:90:3',
'test-wflow_toc.R:126:3', 'test-wflow_use_github.R:48:3',
'test-wflow_use_github.R:202:3', 'test-wflow_use_gitlab.R:135:3',
'test-wflow_view.R:27:3', 'test-wflow_view.R:39:3', 'test-wflow_view.R:49:3',
'test-wflow_view.R:59:3', 'test-wflow_view.R:69:3', 'test-wflow_view.R:80:3',
'test-wflow_view.R:97:3', 'test-wflow_view.R:110:3',
'test-wflow_view.R:129:3', 'test-wflow_view.R:184:3',
'test-wflow_view.R:210:3'
• Only relevant on Windows (14): 'test-obtain_existing_path.R:76:3',
'test-report.R:1105:3', 'test-utility.R:246:3', 'test-utility.R:257:3',
'test-utility.R:268:3', 'test-utility.R:278:3', 'test-utility.R:289:3',
'test-wflow_start.R:453:3', 'test-windows.R:31:3', 'test-windows.R:74:3',
'test-windows.R:117:3', 'test-windows.R:134:3', 'test-windows.R:145:3',
'test-windows.R:156:3'
• Requires the workflowr Git repository (1): 'test-git.R:141:3'
• These tests don't work in R CMD check (1): 'test-pkg-options.R:24:3'
• skipped because pandoc is installed (1): 'test-wflow_build.R:445:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-git.R:181:3'): Git and git2r return same unix time for last commit ──
`result_last_commit_time_sysgit` not identical to `result_last_commit_time_git2r`.
Objects equal but not identical
[ FAIL 1 | WARN 0 | SKIP 169 | PASS 1223 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang