CRAN Package Check Results for Maintainer James Craig <james.craig at certara.com>

CRAN Package Check Results for Maintainer ‘James Craig <james.craig at certara.com>’

Last updated on 2024-11-22 09:49:38 CET.

Package	ERROR	NOTE	OK
Certara.NLME8			13
Certara.R		2	11
Certara.RsNLME			11
Certara.VPCResults			13
tidyvpc	1		12
vachette			13

Version: 1.1.0
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘DT’ ‘batchtools’ ‘data.table’ ‘dplyr’ ‘ggplot2’ ‘htmltools’ ‘jsonlite’ ‘magrittr’ ‘methods’ ‘plotly’ ‘reshape’ ‘rlang’ ‘shiny’ ‘shinyWidgets’ ‘shinyjqui’ ‘shinyjs’ ‘shinymaterial’ ‘sortable’ ‘ssh’ ‘xml2’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package Certara.RsNLME

Current CRAN status: OK: 11

Package Certara.VPCResults

Current CRAN status: OK: 13

Package tidyvpc

Current CRAN status: ERROR: 1, OK: 12

Version: 1.5.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘tidyvpc_cat.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/binning_1-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47194 bytes Input file size = 47332 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39181 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39181 Output IDAT size = 39181 bytes (8013 bytes decrease) Output file size = 39259 bytes (8073 bytes = 17.06% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/binning_2-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 74293 bytes Input file size = 74479 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58386 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58386 Output IDAT size = 58386 bytes (15907 bytes decrease) Output file size = 58464 bytes (16015 bytes = 21.50% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/unnamed-chunk-4-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48268 bytes Input file size = 48406 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41027 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41027 Output IDAT size = 41027 bytes (7241 bytes decrease) Output file size = 41105 bytes (7301 bytes = 15.08% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/unnamed-chunk-5-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 77334 bytes Input file size = 77520 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61682 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61682 Output IDAT size = 61682 bytes (15652 bytes decrease) Output file size = 61760 bytes (15760 bytes = 20.33% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/unnamed-chunk-8-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45476 bytes Input file size = 45614 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39185 Output IDAT size = 39185 bytes (6291 bytes decrease) Output file size = 39263 bytes (6351 bytes = 13.92% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/unnamed-chunk-11-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 81425 bytes Input file size = 81611 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 64840 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 64840 Output IDAT size = 64840 bytes (16585 bytes decrease) Output file size = 64918 bytes (16693 bytes = 20.45% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cat_files/figure-html/unnamed-chunk-16-1.png 720x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 116982 bytes Input file size = 117228 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92851 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92851 Output IDAT size = 92851 bytes (24131 bytes decrease) Output file size = 92929 bytes (24299 bytes = 20.73% decrease) --- finished re-building ‘tidyvpc_cat.Rmd’ --- re-building ‘tidyvpc_cont.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cont_files/figure-html/unnamed-chunk-15-1.png 864x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111987 bytes Input file size = 112221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 90392 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 90392 Output IDAT size = 90392 bytes (21595 bytes decrease) Output file size = 90470 bytes (21751 bytes = 19.38% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_cont_files/figure-html/unnamed-chunk-16-1.png 864x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 129403 bytes Input file size = 129661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 104516 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 104516 Output IDAT size = 104516 bytes (24887 bytes decrease) Output file size = 104594 bytes (25067 bytes = 19.33% decrease) Quitting from lines 213-221 [unnamed-chunk-17] (tidyvpc_cont.Rmd) Error: processing vignette 'tidyvpc_cont.Rmd' failed with diagnostics: NA/NaN/Inf in foreign function call (arg 2) --- failed re-building ‘tidyvpc_cont.Rmd’ --- re-building ‘tidyvpc_nlmixr2.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_nlmixr2_files/figure-html/vpc-std-plot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44083 bytes Input file size = 44221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34835 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34835 Output IDAT size = 34835 bytes (9248 bytes decrease) Output file size = 34913 bytes (9308 bytes = 21.05% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidyvpc.Rcheck/vign_test/tidyvpc/vignettes/tidyvpc_nlmixr2_files/figure-html/vpc-predcorr-plot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42513 bytes Input file size = 42651 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33848 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33848 Output IDAT size = 33848 bytes (8665 bytes decrease) Output file size = 33926 bytes (8725 bytes = 20.46% decrease) --- finished re-building ‘tidyvpc_nlmixr2.Rmd’ SUMMARY: processing the following file failed: ‘tidyvpc_cont.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Package vachette

Current CRAN status: OK: 13