Last updated on 2025-03-24 08:51:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7.3 | 9.61 | 156.67 | 166.28 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.7.3 | 7.25 | 117.85 | 125.10 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.7.3 | 258.05 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.7.3 | 260.39 | NOTE | |||
| r-devel-macos-arm64 | 1.7.3 | 78.00 | OK | |||
| r-devel-macos-x86_64 | 1.7.3 | 125.00 | OK | |||
| r-devel-windows-x86_64 | 1.7.3 | 13.00 | 167.00 | 180.00 | NOTE | |
| r-patched-linux-x86_64 | 1.7.3 | 11.83 | 143.34 | 155.17 | NOTE | |
| r-release-linux-x86_64 | 1.7.3 | 10.24 | 140.62 | 150.86 | OK | |
| r-release-macos-arm64 | 1.7.3 | 78.00 | OK | |||
| r-release-macos-x86_64 | 1.7.3 | 118.00 | OK | |||
| r-release-windows-x86_64 | 1.7.3 | 14.00 | 164.00 | 178.00 | OK | |
| r-oldrel-macos-arm64 | 1.7.3 | OK | ||||
| r-oldrel-macos-x86_64 | 1.7.3 | 132.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.7.3 | 16.00 | 201.00 | 217.00 | OK |
Version: 1.7.3
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘AddHealth.Rd’ ‘oral.Rd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 1.7.3
Check: for unstated dependencies in ‘demo’
Result: NOTE
'library' or 'require' calls not declared from:
‘KernSmooth’ ‘aplpack’ ‘foreign’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.7.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘HE_manova.Rmd’ using rmarkdown
Warning: Duplicated chunk option(s) 'echo' in both chunk header and pipe comments of the chunk 'plastic1a'.
** Processing: fig/manova-addhealth-means-each-1.png
672x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14086 bytes
Input file size = 14956 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12456
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12379
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12379
Output IDAT size = 12379 bytes (1707 bytes decrease)
Output file size = 12457 bytes (2499 bytes = 16.71% decrease)
** Processing: fig/manova-addhealth-means-plot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21705 bytes
Input file size = 21807 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18271
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18271
Output IDAT size = 18271 bytes (3434 bytes decrease)
Output file size = 18349 bytes (3458 bytes = 15.86% decrease)
** Processing: fig/manova-addhealth-covellipse-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58027 bytes
Input file size = 58189 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47848
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47848
Output IDAT size = 47848 bytes (10179 bytes decrease)
Output file size = 47926 bytes (10263 bytes = 17.64% decrease)
** Processing: fig/manova-addhealth-heplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29031 bytes
Input file size = 29145 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23298
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23298
Output IDAT size = 23298 bytes (5733 bytes decrease)
Output file size = 23376 bytes (5769 bytes = 19.79% decrease)
** Processing: fig/manova-plastic1a-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38511 bytes
Input file size = 38637 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30307
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30307
Output IDAT size = 30307 bytes (8204 bytes decrease)
Output file size = 30385 bytes (8252 bytes = 21.36% decrease)
** Processing: fig/manova-plastic1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44324 bytes
Input file size = 44462 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35142
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35142
Output IDAT size = 35142 bytes (9182 bytes decrease)
Output file size = 35220 bytes (9242 bytes = 20.79% decrease)
** Processing: fig/manova-plastic2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58313 bytes
Input file size = 58475 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47515
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47515
Output IDAT size = 47515 bytes (10798 bytes decrease)
Output file size = 47593 bytes (10882 bytes = 18.61% decrease)
** Processing: fig/manova-jury-mod1-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30324 bytes
Input file size = 30438 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25629
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25629
Output IDAT size = 25629 bytes (4695 bytes decrease)
Output file size = 25707 bytes (4731 bytes = 15.54% decrease)
** Processing: fig/manova-jury-mod1-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81762 bytes
Input file size = 81948 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 64601
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 64601
Output IDAT size = 64601 bytes (17161 bytes decrease)
Output file size = 64679 bytes (17269 bytes = 21.07% decrease)
** Processing: fig/manova-jury-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32755 bytes
Input file size = 32869 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26912
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26912
Output IDAT size = 26912 bytes (5843 bytes decrease)
Output file size = 26990 bytes (5879 bytes = 17.89% decrease)
** Processing: fig/manova-jury-mod2-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34477 bytes
Input file size = 34603 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29948
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29948
Output IDAT size = 29948 bytes (4529 bytes decrease)
Output file size = 30026 bytes (4577 bytes = 13.23% decrease)
** Processing: fig/manova-jury-mod3-eff-1.png
864x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36505 bytes
Input file size = 36631 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30241
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30241
Output IDAT size = 30241 bytes (6264 bytes decrease)
Output file size = 30319 bytes (6312 bytes = 17.23% decrease)
** Processing: fig/manova-skulls4-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 33971 bytes
Input file size = 34877 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30313
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30313
Output IDAT size = 30313 bytes (3658 bytes decrease)
Output file size = 30391 bytes (4486 bytes = 12.86% decrease)
** Processing: fig/manova-skulls-bwplot-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48378 bytes
Input file size = 48516 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38663
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38663
Output IDAT size = 38663 bytes (9715 bytes decrease)
Output file size = 38741 bytes (9775 bytes = 20.15% decrease)
** Processing: fig/manova-skulls-HE-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 120929 bytes
Input file size = 121175 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98211
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98211
Output IDAT size = 98211 bytes (22718 bytes decrease)
Output file size = 98289 bytes (22886 bytes = 18.89% decrease)
--- finished re-building ‘HE_manova.Rmd’
--- re-building ‘HE_mmra.Rmd’ using rmarkdown
** Processing: fig/mmra-rohwer-long-ggplot-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60257 bytes
Input file size = 60419 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47558
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47558
Output IDAT size = 47558 bytes (12699 bytes decrease)
Output file size = 47636 bytes (12783 bytes = 21.16% decrease)
** Processing: fig/mmra-rohwer-coefplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44972 bytes
Input file size = 45110 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38348
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38348
Output IDAT size = 38348 bytes (6624 bytes decrease)
Output file size = 38426 bytes (6684 bytes = 14.82% decrease)
** Processing: fig/mmra-rohwer-coefplot-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48990 bytes
Input file size = 49128 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41134
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41134
Output IDAT size = 41134 bytes (7856 bytes decrease)
Output file size = 41212 bytes (7916 bytes = 16.11% decrease)
** Processing: fig/mmra-rohwer-HE1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35873 bytes
Input file size = 35999 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29429
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29429
Output IDAT size = 29429 bytes (6444 bytes decrease)
Output file size = 29507 bytes (6492 bytes = 18.03% decrease)
** Processing: fig/mmra-rohwer-HE2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43871 bytes
Input file size = 44009 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34628
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34628
Output IDAT size = 34628 bytes (9243 bytes decrease)
Output file size = 34706 bytes (9303 bytes = 21.14% decrease)
** Processing: fig/mmra-rohwer-HE2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46219 bytes
Input file size = 46357 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37197
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37197
Output IDAT size = 37197 bytes (9022 bytes decrease)
Output file size = 37275 bytes (9082 bytes = 19.59% decrease)
** Processing: fig/mmra-rohwer-HE3-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 91495 bytes
Input file size = 91705 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71390
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71390
Output IDAT size = 71390 bytes (20105 bytes decrease)
Output file size = 71468 bytes (20237 bytes = 22.07% decrease)
** Processing: fig/mmra-rohwer-HE4-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42021 bytes
Input file size = 42159 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33745
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33745
Output IDAT size = 33745 bytes (8276 bytes decrease)
Output file size = 33823 bytes (8336 bytes = 19.77% decrease)
** Processing: fig/mmra-hern-pairs-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 129048 bytes
Input file size = 129306 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 100697
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 100697
Output IDAT size = 100697 bytes (28351 bytes decrease)
Output file size = 100775 bytes (28531 bytes = 22.06% decrease)
** Processing: fig/mmra-hern-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15278 bytes
Input file size = 15368 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12799
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12799
Output IDAT size = 12799 bytes (2479 bytes decrease)
Output file size = 12877 bytes (2491 bytes = 16.21% decrease)
** Processing: fig/mmra-hern-can1-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16142 bytes
Input file size = 16232 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13455
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13455
Output IDAT size = 13455 bytes (2687 bytes decrease)
Output file size = 13533 bytes (2699 bytes = 16.63% decrease)
** Processing: fig/mmra-hern-can2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18311 bytes
Input file size = 18413 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15419
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15419
Output IDAT size = 15419 bytes (2892 bytes decrease)
Output file size = 15497 bytes (2916 bytes = 15.84% decrease)
** Processing: fig/mmra-hern-can2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15740 bytes
Input file size = 15830 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13143
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13143
Output IDAT size = 13143 bytes (2597 bytes decrease)
Output file size = 13221 bytes (2609 bytes = 16.48% decrease)
** Processing: fig/mmra-grades-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 113199 bytes
Input file size = 113433 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93792
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93792
Output IDAT size = 93792 bytes (19407 bytes decrease)
Output file size = 93870 bytes (19563 bytes = 17.25% decrease)
** Processing: fig/mmra-grades-can-class-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28050 bytes
Input file size = 28164 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22329
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22329
Output IDAT size = 22329 bytes (5721 bytes decrease)
Output file size = 22407 bytes (5757 bytes = 20.44% decrease)
** Processing: fig/mmra-grades-can-all-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16287 bytes
Input file size = 16377 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13636
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13636
Output IDAT size = 13636 bytes (2651 bytes decrease)
Output file size = 13714 bytes (2663 bytes = 16.26% decrease)
** Processing: fig/mmra-grades-can-all-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20874 bytes
Input file size = 20976 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17479
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17479
Output IDAT size = 17479 bytes (3395 bytes decrease)
Output file size = 17557 bytes (3419 bytes = 16.30% decrease)
--- finished re-building ‘HE_mmra.Rmd’
--- re-building ‘datasets.Rmd’ using rmarkdown
Quitting from datasets.Rmd:112-130 [datasets]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Please install the `litedown` package.
---
Backtrace:
▆
1. └─tools:::.buildOneVignette(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─engine$weave(file, quiet = quiet, encoding = enc)
7. └─knitr:::vweave_rmarkdown(...)
8. └─rmarkdown::render(...)
9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. └─knitr:::process_file(text, output)
11. ├─xfun:::handle_error(...)
12. ├─base::withCallingHandlers(...)
13. └─knitr:::process_group(group)
14. └─knitr:::call_block(x)
15. └─knitr:::block_exec(params)
16. └─knitr:::eng_r(options)
17. ├─knitr:::in_input_dir(...)
18. │ └─knitr:::in_dir(input_dir(), expr)
19. └─knitr (local) evaluate(...)
20. └─evaluate::evaluate(...)
21. ├─base::withRestarts(...)
22. │ └─base (local) withRestartList(expr, restarts)
23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. │ │ └─base (local) doWithOneRestart(return(expr), restart)
25. │ └─base (local) withRestartList(expr, restarts[-nr])
26. │ └─base (local) withOneRestart(expr, restarts[[1L]])
27. │ └─base (local) doWithOneRestart(return(expr), restart)
28. ├─evaluate:::with_handlers(...)
29. │ ├─base::eval(call)
30. │ │ └─base::eval(call)
31. │ └─base::withCallingHandlers(...)
32. └─watcher$print_value(ev$value, ev$visible, envir)
33. ├─base::withVisible(handle_value(handler, value, visible, envir))
34. └─evaluate:::handle_value(handler, value, visible, envir)
35. └─handler$value(value, visible)
36. └─knitr (local) fun(x, options = options)
37. ├─base::withVisible(knit_print(x, ...))
38. ├─knitr::knit_print(x, ...)
39. └─tinytable::knit_print.tinytable(x, ...)
40. └─tinytable:::build_tt(x, output = output)
41. ├─base::eval(l)
42. │ └─base::eval(l)
43. └─tinytable:::format_tt_lazy(...)
44. └─tinytable:::assert_dependency("litedown")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'datasets.Rmd' failed with diagnostics:
Please install the `litedown` package.
--- failed re-building ‘datasets.Rmd’
--- re-building ‘repeated-JSS.pdf.asis’ using asis
--- finished re-building ‘repeated-JSS.pdf.asis’
SUMMARY: processing the following file failed:
‘datasets.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.7.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘HE_manova.Rmd’ using rmarkdown
Warning: Duplicated chunk option(s) 'echo' in both chunk header and pipe comments of the chunk 'plastic1a'.
** Processing: fig/manova-addhealth-means-each-1.png
672x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13982 bytes
Input file size = 14852 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12433
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12290
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12290
Output IDAT size = 12290 bytes (1692 bytes decrease)
Output file size = 12368 bytes (2484 bytes = 16.73% decrease)
** Processing: fig/manova-addhealth-means-plot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21635 bytes
Input file size = 21737 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17943
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17943
Output IDAT size = 17943 bytes (3692 bytes decrease)
Output file size = 18021 bytes (3716 bytes = 17.10% decrease)
** Processing: fig/manova-addhealth-covellipse-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57924 bytes
Input file size = 58086 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47122
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47122
Output IDAT size = 47122 bytes (10802 bytes decrease)
Output file size = 47200 bytes (10886 bytes = 18.74% decrease)
** Processing: fig/manova-addhealth-heplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28929 bytes
Input file size = 29043 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22734
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22734
Output IDAT size = 22734 bytes (6195 bytes decrease)
Output file size = 22812 bytes (6231 bytes = 21.45% decrease)
** Processing: fig/manova-plastic1a-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38424 bytes
Input file size = 38550 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29739
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29739
Output IDAT size = 29739 bytes (8685 bytes decrease)
Output file size = 29817 bytes (8733 bytes = 22.65% decrease)
** Processing: fig/manova-plastic1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44213 bytes
Input file size = 44351 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34362
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34362
Output IDAT size = 34362 bytes (9851 bytes decrease)
Output file size = 34440 bytes (9911 bytes = 22.35% decrease)
** Processing: fig/manova-plastic2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58245 bytes
Input file size = 58407 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46641
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46641
Output IDAT size = 46641 bytes (11604 bytes decrease)
Output file size = 46719 bytes (11688 bytes = 20.01% decrease)
** Processing: fig/manova-jury-mod1-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30237 bytes
Input file size = 30351 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25378
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25378
Output IDAT size = 25378 bytes (4859 bytes decrease)
Output file size = 25456 bytes (4895 bytes = 16.13% decrease)
** Processing: fig/manova-jury-mod1-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81381 bytes
Input file size = 81567 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61827
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61827
Output IDAT size = 61827 bytes (19554 bytes decrease)
Output file size = 61905 bytes (19662 bytes = 24.11% decrease)
** Processing: fig/manova-jury-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32641 bytes
Input file size = 32755 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26029
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26029
Output IDAT size = 26029 bytes (6612 bytes decrease)
Output file size = 26107 bytes (6648 bytes = 20.30% decrease)
** Processing: fig/manova-jury-mod2-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34334 bytes
Input file size = 34460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28873
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28873
Output IDAT size = 28873 bytes (5461 bytes decrease)
Output file size = 28951 bytes (5509 bytes = 15.99% decrease)
** Processing: fig/manova-jury-mod3-eff-1.png
864x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36223 bytes
Input file size = 36349 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28808
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28808
Output IDAT size = 28808 bytes (7415 bytes decrease)
Output file size = 28886 bytes (7463 bytes = 20.53% decrease)
** Processing: fig/manova-skulls4-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 33868 bytes
Input file size = 34774 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30348
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30271
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30271
Output IDAT size = 30271 bytes (3597 bytes decrease)
Output file size = 30349 bytes (4425 bytes = 12.73% decrease)
** Processing: fig/manova-skulls-bwplot-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48179 bytes
Input file size = 48317 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36763
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36763
Output IDAT size = 36763 bytes (11416 bytes decrease)
Output file size = 36841 bytes (11476 bytes = 23.75% decrease)
** Processing: fig/manova-skulls-HE-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 120283 bytes
Input file size = 120529 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92751
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92751
Output IDAT size = 92751 bytes (27532 bytes decrease)
Output file size = 92829 bytes (27700 bytes = 22.98% decrease)
--- finished re-building ‘HE_manova.Rmd’
--- re-building ‘HE_mmra.Rmd’ using rmarkdown
** Processing: fig/mmra-rohwer-long-ggplot-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59900 bytes
Input file size = 60062 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46042
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46042
Output IDAT size = 46042 bytes (13858 bytes decrease)
Output file size = 46120 bytes (13942 bytes = 23.21% decrease)
** Processing: fig/mmra-rohwer-coefplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44811 bytes
Input file size = 44949 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37591
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37591
Output IDAT size = 37591 bytes (7220 bytes decrease)
Output file size = 37669 bytes (7280 bytes = 16.20% decrease)
** Processing: fig/mmra-rohwer-coefplot-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48822 bytes
Input file size = 48960 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39895
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39895
Output IDAT size = 39895 bytes (8927 bytes decrease)
Output file size = 39973 bytes (8987 bytes = 18.36% decrease)
** Processing: fig/mmra-rohwer-HE1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35734 bytes
Input file size = 35860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28210
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28210
Output IDAT size = 28210 bytes (7524 bytes decrease)
Output file size = 28288 bytes (7572 bytes = 21.12% decrease)
** Processing: fig/mmra-rohwer-HE2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43610 bytes
Input file size = 43748 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33023
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33023
Output IDAT size = 33023 bytes (10587 bytes decrease)
Output file size = 33101 bytes (10647 bytes = 24.34% decrease)
** Processing: fig/mmra-rohwer-HE2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45928 bytes
Input file size = 46066 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35601
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35601
Output IDAT size = 35601 bytes (10327 bytes decrease)
Output file size = 35679 bytes (10387 bytes = 22.55% decrease)
** Processing: fig/mmra-rohwer-HE3-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 90912 bytes
Input file size = 91122 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66530
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66530
Output IDAT size = 66530 bytes (24382 bytes decrease)
Output file size = 66608 bytes (24514 bytes = 26.90% decrease)
** Processing: fig/mmra-rohwer-HE4-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41870 bytes
Input file size = 42008 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31400
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31400
Output IDAT size = 31400 bytes (10470 bytes decrease)
Output file size = 31478 bytes (10530 bytes = 25.07% decrease)
** Processing: fig/mmra-hern-pairs-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 128712 bytes
Input file size = 128970 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 97407
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 97407
Output IDAT size = 97407 bytes (31305 bytes decrease)
Output file size = 97485 bytes (31485 bytes = 24.41% decrease)
** Processing: fig/mmra-hern-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15225 bytes
Input file size = 15315 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12561
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12561
Output IDAT size = 12561 bytes (2664 bytes decrease)
Output file size = 12639 bytes (2676 bytes = 17.47% decrease)
** Processing: fig/mmra-hern-can1-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16091 bytes
Input file size = 16181 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13066
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13066
Output IDAT size = 13066 bytes (3025 bytes decrease)
Output file size = 13144 bytes (3037 bytes = 18.77% decrease)
** Processing: fig/mmra-hern-can2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18237 bytes
Input file size = 18339 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14923
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14923
Output IDAT size = 14923 bytes (3314 bytes decrease)
Output file size = 15001 bytes (3338 bytes = 18.20% decrease)
** Processing: fig/mmra-hern-can2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15685 bytes
Input file size = 15775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12866
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12866
Output IDAT size = 12866 bytes (2819 bytes decrease)
Output file size = 12944 bytes (2831 bytes = 17.95% decrease)
** Processing: fig/mmra-grades-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 112985 bytes
Input file size = 113219 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 91085
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 91085
Output IDAT size = 91085 bytes (21900 bytes decrease)
Output file size = 91163 bytes (22056 bytes = 19.48% decrease)
** Processing: fig/mmra-grades-can-class-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27911 bytes
Input file size = 28025 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21592
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21592
Output IDAT size = 21592 bytes (6319 bytes decrease)
Output file size = 21670 bytes (6355 bytes = 22.68% decrease)
** Processing: fig/mmra-grades-can-all-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16222 bytes
Input file size = 16312 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13297
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13297
Output IDAT size = 13297 bytes (2925 bytes decrease)
Output file size = 13375 bytes (2937 bytes = 18.01% decrease)
** Processing: fig/mmra-grades-can-all-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20802 bytes
Input file size = 20904 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16891
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16891
Output IDAT size = 16891 bytes (3911 bytes decrease)
Output file size = 16969 bytes (3935 bytes = 18.82% decrease)
--- finished re-building ‘HE_mmra.Rmd’
--- re-building ‘datasets.Rmd’ using rmarkdown
Quitting from datasets.Rmd:112-130 [datasets]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Please install the `litedown` package.
---
Backtrace:
▆
1. └─tools:::.buildOneVignette(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─engine$weave(file, quiet = quiet, encoding = enc)
7. └─knitr:::vweave_rmarkdown(...)
8. └─rmarkdown::render(...)
9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. └─knitr:::process_file(text, output)
11. ├─xfun:::handle_error(...)
12. ├─base::withCallingHandlers(...)
13. └─knitr:::process_group(group)
14. └─knitr:::call_block(x)
15. └─knitr:::block_exec(params)
16. └─knitr:::eng_r(options)
17. ├─knitr:::in_input_dir(...)
18. │ └─knitr:::in_dir(input_dir(), expr)
19. └─knitr (local) evaluate(...)
20. └─evaluate::evaluate(...)
21. ├─base::withRestarts(...)
22. │ └─base (local) withRestartList(expr, restarts)
23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. │ │ └─base (local) doWithOneRestart(return(expr), restart)
25. │ └─base (local) withRestartList(expr, restarts[-nr])
26. │ └─base (local) withOneRestart(expr, restarts[[1L]])
27. │ └─base (local) doWithOneRestart(return(expr), restart)
28. ├─evaluate:::with_handlers(...)
29. │ ├─base::eval(call)
30. │ │ └─base::eval(call)
31. │ └─base::withCallingHandlers(...)
32. └─watcher$print_value(ev$value, ev$visible, envir)
33. ├─base::withVisible(handle_value(handler, value, visible, envir))
34. └─evaluate:::handle_value(handler, value, visible, envir)
35. └─handler$value(value, visible)
36. └─knitr (local) fun(x, options = options)
37. ├─base::withVisible(knit_print(x, ...))
38. ├─knitr::knit_print(x, ...)
39. └─tinytable::knit_print.tinytable(x, ...)
40. └─tinytable:::build_tt(x, output = output)
41. ├─base::eval(l)
42. │ └─base::eval(l)
43. └─tinytable:::format_tt_lazy(...)
44. └─tinytable:::assert_dependency("litedown")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'datasets.Rmd' failed with diagnostics:
Please install the `litedown` package.
--- failed re-building ‘datasets.Rmd’
--- re-building ‘repeated-JSS.pdf.asis’ using asis
--- finished re-building ‘repeated-JSS.pdf.asis’
SUMMARY: processing the following file failed:
‘datasets.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang