Last updated on 2025-03-28 08:54:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9 | 1.97 | 44.47 | 46.44 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.9 | 1.47 | 35.35 | 36.82 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9 | 77.61 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9 | 86.84 | NOTE | |||
| r-devel-macos-arm64 | 0.9 | 42.00 | OK | |||
| r-devel-macos-x86_64 | 0.9 | 74.00 | OK | |||
| r-devel-windows-x86_64 | 0.9 | 4.00 | 125.00 | 129.00 | OK | |
| r-patched-linux-x86_64 | 0.9 | 2.10 | 44.83 | 46.93 | OK | |
| r-release-linux-x86_64 | 0.9 | 2.01 | 41.93 | 43.94 | OK | |
| r-release-macos-arm64 | 0.9 | 35.00 | OK | |||
| r-release-macos-x86_64 | 0.9 | 49.00 | OK | |||
| r-release-windows-x86_64 | 0.9 | 3.00 | 130.00 | 133.00 | OK | |
| r-oldrel-macos-arm64 | 0.9 | ERROR | ||||
| r-oldrel-macos-x86_64 | 0.9 | 43.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.9 | 4.00 | 132.00 | 136.00 | OK |
Version: 0.9
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Error in open.connection(x, "rb") : cannot open the connection
Calls: getGeneExpressionFromGEO ... getAndParseGSEMatrices -> getDirListing -> <Anonymous> -> read_html.default
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.9
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘R.utils’ ‘markdown’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.9
Check: package dependencies
Result: ERROR
Package required but not available: ‘GEOquery’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64