Last updated on 2024-11-25 09:49:58 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.6.1 | 24.70 | 56.44 | 81.14 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.6.1 | 17.37 | 41.49 | 58.86 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.6.1 | 179.89 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.6.1 | 129.95 | OK | |||
| r-devel-windows-x86_64 | 2.6.1 | 34.00 | 94.00 | 128.00 | OK | |
| r-patched-linux-x86_64 | 2.6.1 | 24.02 | 52.85 | 76.87 | OK | |
| r-release-linux-x86_64 | 2.6.1 | 23.06 | 53.39 | 76.45 | OK | |
| r-release-macos-arm64 | 2.6.1 | 44.00 | OK | |||
| r-release-macos-x86_64 | 2.6.1 | 54.00 | OK | |||
| r-release-windows-x86_64 | 2.6.1 | 34.00 | 91.00 | 125.00 | OK | |
| r-oldrel-macos-arm64 | 2.6.1 | 48.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.6.1 | 78.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.6.1 | 40.00 | 103.00 | 143.00 | OK |
Version: 2.6.1
Check: examples
Result: ERROR
Running examples in ‘Familias-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Familias-package
> ### Title: Familias: Inferring paternity and identification based on DNA
> ### data
> ### Aliases: Familias-package Familias
> ### Keywords: package
>
> ### ** Examples
>
> persons <- c("mother", "daughter", "AF")
>
> # Pedigrees
> ped1 <- FamiliasPedigree(id = persons,
+ dadid = c(NA, "AF", NA),
+ momid = c(NA, "mother", NA),
+ sex = c("female", "female", "male"))
>
> ped2 <- FamiliasPedigree(id = c(persons, "TF"),
+ dadid = c(NA, "TF", NA, NA),
+ momid = c(NA, "mother", NA, NA),
+ sex = c("female", "female", "male", "male"))
>
> ped3 <- FamiliasPedigree(id = c(persons, "TF", "gf", "gm"),
+ dadid = c(NA, "TF", "gf", "gf", NA, NA),
+ momid = c(NA, "mother", "gm", "gm", NA, NA),
+ sex = c("female", "female", "male", "male", "male", "female"))
> op <- par(mfrow = c(1,3))
> plot(ped1); title("ped1: AF is father")
> plot(ped2); title("ped2: AF is unrelated")
Did not plot the following people: AF
> plot(ped3); title("ped3: AF is uncle")
> par(op)
>
> mypedigrees <- list(isFather = ped1, unrelated=ped2, isUncle = ped3)
>
> # Loci
> locus1 <- FamiliasLocus(frequencies = c(0.1, 0.2, 0.3, 0.4),
+ allelenames = c("A", "B", "C", "D"),
+ name = "locus1")
> locus2 <- FamiliasLocus(c(0.2, 0.3, 0.5),
+ c(17, 18, 19),
+ "loc2",
+ femaleMutationRate = 0.05)
> myloci <- list(locus1, locus2)
>
> # Genotype data
> datamatrix <- data.frame(locus1.1 = c("A", "A", "A"),
+ locus1.2 = c("B", "B", "C"),
+ locus2.1 = c(17, 19, 19),
+ locus2.2 = c(18, 18, 18),
+ row.names = persons)
>
> # Calculate LR
> FamiliasPosterior(mypedigrees, myloci, datamatrix)
*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-clang