Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information

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Documentation for package ‘adaptMT’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

adapt	Adaptive P-value Thresholding
adapt_gam	Adaptive P-value Thresholding with Generalized Additive Models
adapt_glm	Adaptive P-value Thresholding with Generalized Linear Models
adapt_glmnet	Adaptive P-value Thresholding with L1/L2 Penalized Generalized Linear Models
beta_family	Generate exp_family Objects for Exponential Families
corr_lfdr	Quantifying Information Loss of Adaptive P-Value Thresholding
ctgm_lfdr	Fitting Conditional Two-Groups Models on Unmasked P-Values
estrogen	Gene/Drug response dataset
gen_adapt_model	adapt_model Objects for M-steps
gen_exp_family	Generate exp_family Objects for Exponential Families
inv_gaussian_family	Generate exp_family Objects for Exponential Families
plot_1d	Plotting Functions for AdaPT with 1D Covariates
plot_1d_lfdr	Plotting Functions for AdaPT with 1D Covariates
plot_1d_thresh	Plotting Functions for AdaPT with 1D Covariates
plot_2d	Plotting Functions for AdaPT with 2D Covariates
plot_2d_lfdr	Plotting Functions for AdaPT with 2D Covariates
plot_2d_thresh	Plotting Functions for AdaPT with 2D Covariates