Multivariate Spatio-Temporal Models using Structural Equations

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Documentation for package ‘tinyVAST’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_predictions	Add predictions to data-list
bering_sea	Survey domain for the eastern and northern Bering Sea surveys
bering_sea_pollock_ages	Survey catch-rates at age for Alaska pollock in the Eastern and Northern Bering Sea
bering_sea_pollock_vast	Estimated proportion-at-age for Alaska pollock using VAST
cAIC	Calculate conditional AIC
classify_variables	Classify variables path
condition_and_density	Condition and density example
delta_gamma	Additional families
delta_lognormal	Additional families
deviance_explained	Calculate deviance explained
Families	Additional families
integrate_output	Integration for target variable
logLik.tinyVAST	Extract the (marginal) log-likelihood of a tinyVAST model
make_dsem_ram	Make a RAM (Reticular Action Model)
make_eof_ram	Make a RAM (Reticular Action Model)
make_sem_ram	Make a RAM (Reticular Action Model) from a SEM (structural equation model)
parse_path	Parse path
predict.tinyVAST	Predict using vector autoregressive spatio-temporal model
print.tinyVAST	print summary of tinyVAST model
red_snapper	Presence/absence, count, and biomass data for red snapper
red_snapper_shapefile	Shapefile for red snapper analysis
reload_model	Reload a previously fitted model
residuals.tinyVAST	Calculate deviance or response residuals for tinyVAST
rmvnorm_prec	Multivariate Normal Random Deviates using Sparse Precision
rotate_pca	Rotate factors to match Principal-Components Analysis
salmon_returns	North Pacific salmon returns
sample_variable	Sample from predictive distribution of a variable
sea_ice	Arctic September sea ice concentrations
sfnetwork_evaluator	Construct projection matrix for stream network
sfnetwork_mesh	Make mesh for stream network
simulate.tinyVAST	Simulate new data from a fitted model
simulate_sfnetwork	Simulate GMRF for stream network
summary.tinyVAST	summarize tinyVAST
tinyVAST	Fit vector autoregressive spatio-temporal model
tinyVASTcontrol	Control parameters for tinyVAST
vcov.tinyVAST	Extract Variance-Covariance Matrix