On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.
Version: | 3.4.0 |
Depends: | R (≥ 2.10) |
Imports: | org.Hs.eg.db, AnnotationDbi |
Published: | 2017-04-05 |
DOI: | 10.32614/CRAN.package.jetset |
Author: | Qiyuan Li, Aron Eklund |
Maintainer: | Aron Eklund <eklund at cbs.dtu.dk> |
License: | Artistic-2.0 |
URL: | http://www.cbs.dtu.dk/biotools/jetset/ |
NeedsCompilation: | no |
Citation: | jetset citation info |
Materials: | README NEWS |
CRAN checks: | jetset results |
Reference manual: | jetset.pdf |
Vignettes: |
Using jetset |
Package source: | jetset_3.4.0.tar.gz |
Windows binaries: | r-devel: jetset_3.4.0.zip, r-release: jetset_3.4.0.zip, r-oldrel: jetset_3.4.0.zip |
macOS binaries: | r-devel (arm64): not available, r-release (arm64): jetset_3.4.0.tgz, r-oldrel (arm64): jetset_3.4.0.tgz, r-devel (x86_64): jetset_3.4.0.tgz, r-release (x86_64): jetset_3.4.0.tgz, r-oldrel (x86_64): jetset_3.4.0.tgz |
Old sources: | jetset archive |
Reverse imports: | Patterns |
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