RareComb: Combinatorial and Statistical Analyses of Rare Events

A custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. <doi:10.1101/2021.10.01.462832>.

Version:	1.1
Depends:	R (≥ 2.10)
Imports:	magrittr, arules, dplyr, methods, pwr, stringr, tidyr, reshape2, sqldf
Published:	2022-02-24
DOI:	10.32614/CRAN.package.RareComb
Author:	Vijay Kumar Pounraja [aut, cre]
Maintainer:	Vijay Kumar Pounraja <vijaykumar.mp at gmail.com>
License:	MIT + file LICENSE
NeedsCompilation:	no
Materials:	README
CRAN checks:	RareComb results

Documentation:

Reference manual:

RareComb.pdf

Downloads:

Package source:	RareComb_1.1.tar.gz
Windows binaries:	r-devel: RareComb_1.1.zip, r-release: RareComb_1.1.zip, r-oldrel: RareComb_1.1.zip
macOS binaries:	r-devel (arm64): RareComb_1.1.tgz, r-release (arm64): RareComb_1.1.tgz, r-oldrel (arm64): RareComb_1.1.tgz, r-devel (x86_64): RareComb_1.1.tgz, r-release (x86_64): RareComb_1.1.tgz, r-oldrel (x86_64): RareComb_1.1.tgz
Old sources:	RareComb archive

Linking:

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