CRAN Package Check Results for Package spqdep

Last updated on 2025-03-22 08:53:30 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1.3.5	5.96	72.96	78.92	ERROR
r-devel-linux-x86_64-debian-gcc	0.1.3.5	4.57	52.76	57.33	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.3.5			131.20	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.3.5			163.75	ERROR
r-devel-macos-arm64	0.1.3.5			116.00	OK
r-devel-macos-x86_64	0.1.3.5			220.00	NOTE
r-devel-windows-x86_64	0.1.3.5	9.00	87.00	96.00	ERROR
r-patched-linux-x86_64	0.1.3.5	7.40	68.81	76.21	ERROR
r-release-linux-x86_64	0.1.3.5	5.88	67.42	73.30	ERROR
r-release-macos-arm64	0.1.3.5			127.00	OK
r-release-macos-x86_64	0.1.3.5			220.00	OK
r-release-windows-x86_64	0.1.3.5	8.00	88.00	96.00	ERROR
r-oldrel-macos-arm64	0.1.3.5				OK
r-oldrel-macos-x86_64	0.1.3.5			230.00	OK
r-oldrel-windows-x86_64	0.1.3.5	10.00	102.00	112.00	ERROR

Check Details

Version: 0.1.3.5
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘summary.spjctest.R’ ‘summary.spqtest.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 269.1, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 57.678, df = 81, p-value = 0.9768 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 290.18, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 202.28, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 294.99, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 55.971, df = 81, p-value = 0.9847 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 269.1, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 57.678, df = 81, p-value = 0.9768 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28874 bytes Input file size = 28988 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21274 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21274 Output IDAT size = 21274 bytes (7600 bytes decrease) Output file size = 21352 bytes (7636 bytes = 26.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29819 bytes Input file size = 29933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 Output IDAT size = 27237 bytes (2582 bytes decrease) Output file size = 27315 bytes (2618 bytes = 8.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28643 bytes Input file size = 28757 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 Output IDAT size = 25872 bytes (2771 bytes decrease) Output file size = 25950 bytes (2807 bytes = 9.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28063 bytes Input file size = 28177 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20448 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20448 Output IDAT size = 20448 bytes (7615 bytes decrease) Output file size = 20526 bytes (7651 bytes = 27.15% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21559 bytes Input file size = 21661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16185 Output IDAT size = 16185 bytes (5374 bytes decrease) Output file size = 16263 bytes (5398 bytes = 24.92% decrease) Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 261.01, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 82.941, df = 81, p-value = 0.4193 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 288.99, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 241.94, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 284.37, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 85.244, df = 81, p-value = 0.352 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 261.01, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 82.941, df = 81, p-value = 0.4193 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28742 bytes Input file size = 28856 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21133 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21133 Output IDAT size = 21133 bytes (7609 bytes decrease) Output file size = 21211 bytes (7645 bytes = 26.49% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29819 bytes Input file size = 29933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 Output IDAT size = 27237 bytes (2582 bytes decrease) Output file size = 27315 bytes (2618 bytes = 8.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28643 bytes Input file size = 28757 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 Output IDAT size = 25872 bytes (2771 bytes decrease) Output file size = 25950 bytes (2807 bytes = 9.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27994 bytes Input file size = 28108 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20414 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20414 Output IDAT size = 20414 bytes (7580 bytes decrease) Output file size = 20492 bytes (7616 bytes = 27.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21377 bytes Input file size = 21479 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16003 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16003 Output IDAT size = 16003 bytes (5374 bytes decrease) Output file size = 16081 bytes (5398 bytes = 25.13% decrease) Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 261.77, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 78.631, df = 81, p-value = 0.5539 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 276.33, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 238.87, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 285.55, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 72.942, df = 81, p-value = 0.7266 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 261.77, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 78.631, df = 81, p-value = 0.5539 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29365 bytes Input file size = 29479 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21293 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21293 Output IDAT size = 21293 bytes (8072 bytes decrease) Output file size = 21371 bytes (8108 bytes = 27.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29738 bytes Input file size = 29852 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111 Output IDAT size = 27111 bytes (2627 bytes decrease) Output file size = 27189 bytes (2663 bytes = 8.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28569 bytes Input file size = 28683 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713 Output IDAT size = 25713 bytes (2856 bytes decrease) Output file size = 25791 bytes (2892 bytes = 10.08% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27899 bytes Input file size = 28013 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19643 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19643 Output IDAT size = 19643 bytes (8256 bytes decrease) Output file size = 19721 bytes (8292 bytes = 29.60% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21344 bytes Input file size = 21446 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15199 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15199 Output IDAT size = 15199 bytes (6145 bytes decrease) Output file size = 15277 bytes (6169 bytes = 28.77% decrease) Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 263.92, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 76.423, df = 81, p-value = 0.6232 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 291.46, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 215.39, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 290.69, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 81.871, df = 81, p-value = 0.452 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 263.92, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 76.423, df = 81, p-value = 0.6232 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28861 bytes Input file size = 28975 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20889 Output IDAT size = 20889 bytes (7972 bytes decrease) Output file size = 20967 bytes (8008 bytes = 27.64% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29738 bytes Input file size = 29852 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27111 Output IDAT size = 27111 bytes (2627 bytes decrease) Output file size = 27189 bytes (2663 bytes = 8.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28569 bytes Input file size = 28683 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25713 Output IDAT size = 25713 bytes (2856 bytes decrease) Output file size = 25791 bytes (2892 bytes = 10.08% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27839 bytes Input file size = 27953 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19630 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19630 Output IDAT size = 19630 bytes (8209 bytes decrease) Output file size = 19708 bytes (8245 bytes = 29.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21502 bytes Input file size = 21604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15356 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15356 Output IDAT size = 15356 bytes (6146 bytes decrease) Output file size = 15434 bytes (6170 bytes = 28.56% decrease) Quitting from lines 273-279 [unnamed-chunk-11] (user-guide.Rmd) Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in 'spqdep-Ex.R' failed The error most likely occurred in: > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 270.22, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 52.763, df = 81, p-value = 0.9936 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 284.76, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 216.03, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 287.31, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 59.633, df = 81, p-value = 0.9641 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 270.22, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 52.763, df = 81, p-value = 0.9936 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-devel-windows-x86_64

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'user-guide.Rmd' using rmarkdown Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building 'user-guide.Rmd' SUMMARY: processing the following file failed: 'user-guide.Rmd' Error: Vignette re-building failed. Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 274.37, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 43.822, df = 81, p-value = 0.9998 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 295.86, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 197.69, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 307.63, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 55.381, df = 81, p-value = 0.9868 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 274.37, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 43.822, df = 81, p-value = 0.9998 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-patched-linux-x86_64

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29427 bytes Input file size = 29541 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21600 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21600 Output IDAT size = 21600 bytes (7827 bytes decrease) Output file size = 21678 bytes (7863 bytes = 26.62% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29819 bytes Input file size = 29933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 Output IDAT size = 27237 bytes (2582 bytes decrease) Output file size = 27315 bytes (2618 bytes = 8.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28643 bytes Input file size = 28757 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 Output IDAT size = 25872 bytes (2771 bytes decrease) Output file size = 25950 bytes (2807 bytes = 9.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28201 bytes Input file size = 28315 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20552 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20552 Output IDAT size = 20552 bytes (7649 bytes decrease) Output file size = 20630 bytes (7685 bytes = 27.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21570 bytes Input file size = 21672 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16168 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16168 Output IDAT size = 16168 bytes (5402 bytes decrease) Output file size = 16246 bytes (5426 bytes = 25.04% decrease) Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in ‘spqdep-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 285.89, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 55.624, df = 81, p-value = 0.986 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 298.66, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 223.06, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 315.23, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 62.381, df = 81, p-value = 0.9381 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 285.89, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 55.624, df = 81, p-value = 0.986 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-release-linux-x86_64

Version: 0.1.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘user-guide.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28544 bytes Input file size = 28658 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21001 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21001 Output IDAT size = 21001 bytes (7543 bytes decrease) Output file size = 21079 bytes (7579 bytes = 26.45% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29819 bytes Input file size = 29933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27237 Output IDAT size = 27237 bytes (2582 bytes decrease) Output file size = 27315 bytes (2618 bytes = 8.75% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/plot mh prune-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28643 bytes Input file size = 28757 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25872 Output IDAT size = 25872 bytes (2771 bytes decrease) Output file size = 25950 bytes (2807 bytes = 9.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28178 bytes Input file size = 28292 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20555 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20555 Output IDAT size = 20555 bytes (7623 bytes decrease) Output file size = 20633 bytes (7659 bytes = 27.07% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/spqdep.Rcheck/vign_test/spqdep/vignettes/user-guide_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21642 bytes Input file size = 21744 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16255 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16255 Output IDAT size = 16255 bytes (5387 bytes decrease) Output file size = 16333 bytes (5411 bytes = 24.89% decrease) Quitting from user-guide.Rmd:272-279 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'units' applied to an object of class "NULL" --- Backtrace: ▆ 1. └─spqdep::Q.test(formula = f1, data = provinces_spain, m = 3, r = 1) 2. └─spqdep::m.surround(...) 3. └─base::rbind(mdtms, rowds) 4. └─units (local) rbind(deparse.level, ...) 5. └─base::units(dots[[1]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'user-guide.Rmd' failed with diagnostics: no applicable method for 'units' applied to an object of class "NULL" --- failed re-building ‘user-guide.Rmd’ SUMMARY: processing the following file failed: ‘user-guide.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in 'spqdep-Ex.R' failed The error most likely occurred in: > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 257.62, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 62.788, df = 81, p-value = 0.9334 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 287.2, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 237.88, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 279.24, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 67.023, df = 81, p-value = 0.8676 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 257.62, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 62.788, df = 81, p-value = 0.9334 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-release-windows-x86_64

Version: 0.1.3.5
Check: examples
Result: ERROR Running examples in 'spqdep-Ex.R' failed The error most likely occurred in: > ### Name: Q.map.test > ### Title: Compute the QE and QI tests of Equivalence and Independence > ### between maps > ### Aliases: Q.map.test > > ### ** Examples > > > # Case 1: > N <- 200 > cx <- runif(N) > cy <- runif(N) > x <- cbind(cx,cy) > listw <- spdep::nb2listw(spdep::knn2nb( + spdep::knearneigh(cbind(cx,cy), k = 4))) > p <- c(1/6, 3/6, 2/6) > rho = 0.5 > QY1 <- dgp.spq(p = p, listw = listw, rho = rho) > rho = 0.8 > QY2 <- dgp.spq(p = p, listw = listw, rho = rho) > dt = data.frame(QY1,QY2) > m = 3 > r = 1 > formula <- ~ QY1 + QY2 > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 264.05, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 60.855, df = 81, p-value = 0.9539 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap, ci=.6) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > plot(qmap[[1]]$mh) > summary(qmap[[1]]$mh) Characteristics of m-surrounding: Number of m-surrounding (R): 90 Length of m-surrounding (m): 3 Number no-symbolized observations: 12 List of no-symbolized observations: 8 62 66 69 80 85 117 122 130 146 191 199 List of the degree overlaping: There are 2 m-surrounding that have intersection with 0 m-surrounding There are 12 m-surrounding that have intersection with 1 m-surrounding There are 76 m-surrounding that have intersection with 2 m-surrounding Mean degree of overlaping: 1.8222 > > control <- list(dtmaxknn = 20) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="permutations", control = control) Warning in Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, : The ratio between the number of symbolized observations and the number of symbols is lower than 5. > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QE = 285.36, df = 26, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: permutations Ratio Symbolized observations/Num symbols = 3.44 data: QY1 and QY2 QI = 199.39, df = 676, p-value = 1 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. Warning: No shared levels found between `names(values)` of the manual scale and the data's fill values. > plot(qmap[[1]]$mh) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations") > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QE = 290.05, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9.9 data: QY1 and QY2 QI = 58.709, df = 81, p-value = 0.9706 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > control <- list(dtmaxknn = 10) > qmap <- Q.map.test(formula = formula, data = dt, coor = x, m = m, r = r, + type ="combinations", control = control) > print(qmap) [[1]] Q-Map test of Equivalence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QE = 264.05, df = 9, p-value < 2.2e-16 alternative hypothesis: two.sided [[2]] Q-Map test of Independence for qualitative data. Symbols type: combinations Ratio Symbolized observations/Num symbols = 9 data: QY1 and QY2 QI = 60.855, df = 81, p-value = 0.9539 alternative hypothesis: two.sided attr(,"class") [1] "qmap" "list" > plot(qmap) Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. Warning: Use of `data$symb` is discouraged. ℹ Use `symb` instead. > > # Case 2: > data(provinces_spain) > # sf::sf_use_s2(FALSE) > m = 3 > r = 1 > > provinces_spain$Mal2Fml <- factor(provinces_spain$Mal2Fml > 100) > levels(provinces_spain$Mal2Fml) = c("men","woman") > provinces_spain$Coast <- factor(provinces_spain$Coast) > levels(provinces_spain$Coast) = c("no","yes") > formula <- ~ Coast + Mal2Fml > qmap <- Q.map.test(formula = formula, data = provinces_spain, m = m, r = r, + type ="combinations") Error in UseMethod("units") : no applicable method for 'units' applied to an object of class "NULL" Calls: Q.map.test -> m.surround -> rbind -> rbind -> units Execution halted Flavor: r-oldrel-windows-x86_64