67a99580487ded8683d92ae254eefeed *DESCRIPTION
5505b5bf2355f5487de180dbbbcc22e8 *NAMESPACE
61bf678fc085b3541ca1b1794773dddf *NEWS.md
344ce3566708e1ce893bcdcd139ff8f2 *R/BayesianBiasCorrection.R
0203c793bec7e5478156348a98015675 *R/BayesianMetaAnalysis.R
d934815bcdb43ba9c45bbbb11ffc8255 *R/BayesianSynthesis.R
e9a4ece497fcb5cadffe1e7a7fdc8e59 *R/CohortMethod.R
bab91cac625d0a118ee2842116033d8c *R/EmpiricalCalibration.R
acf1d0876ca374a88ba1415eaddca061 *R/EvidenceSynthesis.R
a0f2abeaa059947712036d2cfb061b67 *R/FixedEffectMetaAnalysis.R
85dd5858b7b02ccbb3c9eceb36a1fa16 *R/HierarchicalMetaAnalysis.R
4dc60198070317f62bb4da9051cf9b7c *R/LikelihoodApproximation.R
0e0758aa5d320acfc2ff0bdbf8adc97e *R/MetaAnalysis.R
f9b4c6d359eb68f76a0e2e6c25f43d0d *R/Plots.R
7d3c787fe537071e0b725626128e5f4e *R/Simulation.R
e1bd5b328499de031a72723f060b1734 *R/Utilities.R
6bd60927b574bca967d550223fc2f4e0 *R/likelihoods-data.R
b884cebf157392a5af6710305cf7ffcb *README.md
99501bebadf7151d3ea0b98ec50c316b *build/vignette.rds
8ddefbb06814da31adf0d523b9ac61e5 *data/hmaLikelihoodList.rda
60790830d1ec5e6cab4ef8005d26f61f *data/likelihoodProfileLists.rda
d91b62d04d42e1f6fe1c11755d186f70 *data/ncLikelihoods.rda
0a2c1c7da6cf3bd7b533179ecfd5da54 *data/ooiLikelihoods.rda
2c29118dac0e3b991e60a4659ecbdf70 *inst/doc/BayesianBiasCorrection.R
1d5c35e6b0b9fe4ed833f78a146ef4f1 *inst/doc/BayesianBiasCorrection.Rmd
8e8381a2e7ed99b87096ab3798de2256 *inst/doc/BayesianBiasCorrection.pdf
0aa2a17c7b9c75f7ca141dd34bf901b8 *inst/doc/NonNormalEffectSynthesis.R
4030aa1a520bdaee944069f24b7dca74 *inst/doc/NonNormalEffectSynthesis.Rmd
af4522a036edc4a7d1981ba44d5e8bd6 *inst/doc/NonNormalEffectSynthesis.pdf
85242cc500b978b22bc39ceb50077ca3 *inst/doc/VideoVignette.R
b05913624a8135eec138cbb95823bedd *inst/doc/VideoVignette.Rmd
25d382693e31d0ada35c69d8f9556f5a *inst/doc/VideoVignette.pdf
6764d093aab3aab103896b302a9f3439 *inst/java/EvidenceSynthesis.jar
273f70bbee4bffb0c39e0f35e813fc08 *java/EvidenceSynthesis.jardesc
b02a3e5daefb3b3dfb387b678fb742d0 *java/dr/inference/hmc/JointGradient.java
430073ba0c191db6adbdda70809b069f *java/dr/inference/hmc/ParallelGradientExecutor.java
95ca29f2b13b556ec8d86b49ad75c523 *java/dr/inference/hmc/ReversibleHMCProvider.java
58b8ce88071ce2ea2a501a3877d56b63 *java/dr/inference/model/PriorPreconditioningProvider.java
22adecc6b6d7d12e0fc8f0e6f87b71c3 *java/dr/inference/operators/hmc/HamiltonianMonteCarloOperator.java
537d093cfac1dafb6d443d56bdc9c4a8 *java/dr/inference/operators/hmc/MassPreconditionScheduler.java
f11c6f582c6afee189fd4b81f6cde868 *java/dr/inference/operators/hmc/MassPreconditioner.java
3395d305b2091e7ac104bf09e1a36952 *java/dr/inference/operators/hmc/MassPreconditioningOptions.java
cffa7cde3863b16356d2f7fb28020897 *java/dr/inference/regression/CyclopsRegressionModel.java
05e392c4dd8fbaf8ae179883980f03cb *java/dr/inference/regression/CyclopsRegressionModelGradient.java
85475ac7f24eb8bad14cedd6b531b73a *java/dr/inference/regression/NewRegressionJNIWrapper.java
4ed9d27d4f75455c3e4118438a82bb1b *java/dr/inference/regression/RegressionInCyclops.java
a70de9018673a6a0adff02f7b660ee98 *java/lib/JRI.jar
f8cb61b8479e70f81e8231c247b4c7a5 *java/org/ohdsi/data/ColumnMajorSortedCoxData.java
9dddcd4e92347573da1ac2ce1c978fce *java/org/ohdsi/data/CoxData.java
ed7600e8871bd706709845d7daacf49a *java/org/ohdsi/data/GridWithGradientsData.java
007e4f1f8583f8923ef3a5d91ebcbe41 *java/org/ohdsi/data/SccsData.java
e71555fd2774131cdeaaa5397508bdf1 *java/org/ohdsi/data/SortedCoxData.java
7d9dc8e1dae701e87fc82d6600d99d00 *java/org/ohdsi/hmc/HmcOptions.java
f5ea22fbb66d409a047801d44ca6d769 *java/org/ohdsi/likelihood/CachedModelLikelihood.java
b3fa5083223cc85b56537eab4f11c019 *java/org/ohdsi/likelihood/ConditionalPoissonLikelihood.java
21c07ab4e2355d4e52eb3a8e922c0bea *java/org/ohdsi/likelihood/CoxPartialLikelihood.java
a63ba4e71a5c70ef7ccb97a697351a84 *java/org/ohdsi/likelihood/ExposureMisclassifiedLogisticLikelihood.java
8ceec76d10402092a8d652940462f823 *java/org/ohdsi/likelihood/GridWithGradientsLikelihood.java
448010ded72ccff6684bf137e38201b5 *java/org/ohdsi/likelihood/MultivariableCoxPartialLikelihood.java
42494a5d787f7c0edc8e84afc076e5dd *java/org/ohdsi/likelihood/SccsPartialLikelihood.java
afa0a70b1c76c831d1e519ac2e02433a *java/org/ohdsi/mcmc/Analysis.java
e906b953e6495b37826ea3424340e1e4 *java/org/ohdsi/mcmc/Runner.java
12815298283821a89e15edbca24fc7d8 *java/org/ohdsi/metaAnalysis/CoxDataModel.java
b17ef2363fe27fd959bae017a650f38a *java/org/ohdsi/metaAnalysis/DataModel.java
30a8ca3bb301abe63a7bdb8003f9747a *java/org/ohdsi/metaAnalysis/EmpiricalDataModel.java
8d201f1c13cedc4a53e2c3ed4458f1aa *java/org/ohdsi/metaAnalysis/ExtendingEmpiricalDataModel.java
5580ff6d43b8931d95ee132faf6c0a26 *java/org/ohdsi/metaAnalysis/GammaOnPrecisionPrior.java
2804a01468a9c2cf50e6f2f272d799f5 *java/org/ohdsi/metaAnalysis/GridWithGradientsDataModel.java
0ddfcc624f59e9dabacc37ca2b08350c *java/org/ohdsi/metaAnalysis/HalfCauchyOnStdDevPrior.java
4929977a970c2a9e457b844acaaf04bc *java/org/ohdsi/metaAnalysis/HalfNormalOnStdDevPrior.java
4c250259aac867c2acc7f21bbf08fbd5 *java/org/ohdsi/metaAnalysis/HierarchicalMetaAnalysis.java
dfb98624d9e33725edf73b59a248b3db *java/org/ohdsi/metaAnalysis/JointAnalysis.java
3b1d271cedbf87cff2a7af359e95d2d9 *java/org/ohdsi/metaAnalysis/LocationHyperPrior.java
d7c1d90d4552df155d897139889763da *java/org/ohdsi/metaAnalysis/MetaAnalysis.java
cc0c50c5c4b7188ed16a60e653ba3861 *java/org/ohdsi/metaAnalysis/MultivariableHierarchicalMetaAnalysis.java
f797ad0ef3e634182dda2a021a5b7b56 *java/org/ohdsi/metaAnalysis/MultivariatePrior.java
f01cdae3f55d06e610a307cb2c760552 *java/org/ohdsi/metaAnalysis/NormalDataModel.java
275961131dcffb8345816bd7088f01e1 *java/org/ohdsi/metaAnalysis/ParametricDataModel.java
a723b4eb816fb9e05c1450615ded47d0 *java/org/ohdsi/metaAnalysis/RobustMetaAnalysis.java
d3b169ef1f093f7747d07b55dabf490b *java/org/ohdsi/metaAnalysis/ScalePrior.java
fabe1aaf30f851f350f7d88e19b6855c *java/org/ohdsi/metaAnalysis/SccsDataModel.java
c9bdef50dbc0f3aa972c40dc1788511b *java/org/ohdsi/metaAnalysis/SkewNormalDataModel.java
6afb50bf55f285b87d59ed01123ce908 *java/org/ohdsi/metaAnalysis/TLocationHyperPrior.java
bde23e34b4c2bf920360dabeb4b524a8 *java/org/ohdsi/mock/CyclopsHierarchicalAnalysisMock.java
f28011ee97c89530e1dcf15be423dd85 *java/org/ohdsi/mock/CyclopsNormalAnalysisMock.java
54bc43737fcb5f9513be683d79bc1dfa *java/org/ohdsi/mock/MockCyclops.java
170819390eee65fdcc1b2cf2183a4ce8 *java/org/ohdsi/simpleDesign/CoxAnalysis.java
745f046af4df3a826af0b236c25ad82c *java/org/ohdsi/simpleDesign/CyclopsNormalAnalysis.java
ac7d84335d37df34aa5eafd399597a43 *java/org/ohdsi/simpleDesign/ExposureMisclassifiedAnalysis.java
312b667de48fa48033217e48247275d2 *java/org/ohdsi/simpleDesign/ProfileHierarchicalNormalAnalysis.java
b682fe27eaa97c7fdd8cbbc1bef6ace4 *java/org/ohdsi/simpleDesign/ProfileNormalAnalysis.java
58fbed83ee47f3a8ea551ad1538ab5e2 *java/org/ohdsi/simpleDesign/SimpleLinearModel.java
9921a3a038e79c47993740884dea85ad *java/org/ohdsi/simpleDesign/SimpleLinearModelGradient.java
a24a4dd834aecee27e0768628ad592a7 *java/org/ohdsi/simpleDesign/SimpleLinearModelGradientWrtArgument.java
5e85d2feebc58739104453fc03160550 *java/org/ohdsi/simpleDesign/SimpleLinearModelGradientWrtEffects.java
7a02f458760ec1a9495bec611431202e *man/EvidenceSynthesis-package.Rd
4542b3ecf0a8048b5750e529c4f0d212 *man/approximateHierarchicalNormalPosterior.Rd
028c700ded760a77cfe79107752da5bb *man/approximateLikelihood.Rd
22eab184f9d3fe2e7cb20f8963b0af64 *man/approximateSimplePosterior.Rd
bd02f1179e890f099ac79e3e332ac6c5 *man/biasCorrectionInference.Rd
9d5544f1c870accf708a440fbc2fbc94 *man/buildLabelReferences.Rd
0dc73571e468869c66f3a05c40277152 *man/computeBayesianMetaAnalysis.Rd
d5243ddbdcd77471d797475b2eb7a929 *man/computeConfidenceInterval.Rd
198d5333e0be8bc3aecb6e1380fa8939 *man/computeFixedEffectMetaAnalysis.Rd
221f66b10ec0202fc28b418a7f31b3c0 *man/computeHierarchicalMetaAnalysis.Rd
b0a0d3370cc9d2e57a983e84f6aae6db *man/constructDataModel.Rd
3636cc0c43913554afce27d139a28149 *man/createApproximations.Rd
80b9f6a6a2c7a1bdb8e5db8e021b4b06 *man/createSccsSimulationSettings.Rd
b3baf3ed9df634cac9ea1e92543728de *man/createSimulationSettings.Rd
b9e197ce9ed22f741fb5255cdf069c1e *man/customFunction.Rd
d3c3e0798c276383a340203b044ba2e9 *man/detectApproximationType.Rd
21b9d73070411d995b464c7e17f80a95 *man/extractSourceSpecificEffects.Rd
28713b376417eec87b74d451b8e47259 *man/fitBiasDistribution.Rd
55ff49a3de475568e2f0ddae2fcfa696 *man/generateBayesianHMAsettings.Rd
ac8e83febabf3e2ff34226a5cd3bc108 *man/hermiteInterpolation.Rd
771731a8843f481c5c9202e9feef2d27 *man/hmaLikelihoodList.Rd
2fddf7ce5585ea6857c4ee9d7b915ead *man/likelihoodProfileLists.Rd
a54cf7db6e045f827d3fd7e99adf0951 *man/loadCyclopsLibraryForJava.Rd
971677a92f50e61a93e2bae84b6c2d70 *man/ncLikelihoods.Rd
28a0f442c23789e6cdb92e81c08095b5 *man/ooiLikelihoods.Rd
d9f474859425b0a95181c18efcd70ae7 *man/plotBiasCorrectionInference.Rd
e31fab676383902b82a4f52c8748e94d *man/plotBiasDistribution.Rd
df4e9ffb5ad941b9163674187272eb6c *man/plotCovariateBalances.Rd
fbc38f518050bde8bc73d04f6871920a *man/plotEmpiricalNulls.Rd
5b7d956531a5b5cbf0be21d2597e509a *man/plotLikelihoodFit.Rd
2125a4b70cc61d2a1499b2edae8457a1 *man/plotMcmcTrace.Rd
e94a3337d651da2aaa9ce410e22bdd00 *man/plotMetaAnalysisForest.Rd
497d99126259c526388aa0ff18612bae *man/plotPerDbMcmcTrace.Rd
a6086d0362099c1ac627244f842a4b09 *man/plotPerDbPosterior.Rd
dc0c00439619eff7b8a25c179d1cdc53 *man/plotPosterior.Rd
c103dd01025d81e9bb5576cdbc6035a4 *man/plotPreparedPs.Rd
999b3d5aae39fd03670aa6a93e559908 *man/preparePsPlot.Rd
40f0bb59f7d424aaaf0e9ef3f691c511 *man/prepareSccsIntervalData.Rd
b1b8f49d2136a2692a8fba4df1f05ea7 *man/sequentialFitBiasDistribution.Rd
97ad74c339168e877c6ed090ee9174c4 *man/simulateMetaAnalysisWithNegativeControls.Rd
6922d241f85a12d9d6405cbcd844a9b0 *man/simulatePopulations.Rd
4872769d9f2cfd4d9eb725b901c26e6a *man/skewNormal.Rd
35ad951a04d6884221ff299b169640d7 *man/summarizeChain.Rd
8ddae5655587582d2f3bad6180b47b5a *man/supportsJava8.Rd
43692766c010d474928748c8e2d4369f *tests/testthat.R
233b11791ef9b75a794951e32b9cd405 *tests/testthat/resources/gsPredictionInterval.rds
32605582e768c0c19bd573d95b2fc477 *tests/testthat/resources/pooledFixedFxEstimate.rds
e71144baefb2c0a358ce001a76884e33 *tests/testthat/resources/pooledRandomFxEstimate.rds
de1eac046eed315e9bdca1fcec72887e *tests/testthat/resources/populations.rds
ef7b900d827cf1b0c17de222ab2d04c1 *tests/testthat/resources/sccsPooledFixedFxEstimate.rds
3980319dacf69fce560e49c5224420cb *tests/testthat/resources/sccsPooledRandomFxEstimate.rds
bd1e0d5b62180e0f3151dc72385db6b9 *tests/testthat/resources/sccsPopulations.rds
1e38e1870f14c34ad3657b6387028f8f *tests/testthat/resources/tracesForPi.rds
41177028c1a3db42d6d360b66ff9988d *tests/testthat/test-balance.R
bf4181eb3705dbc9450ca4f46d953aa4 *tests/testthat/test-biasCorrection.R
1e7eaa527978867fc577012bd189f24a *tests/testthat/test-cyclopsViaJava.R
6f098032c2751c63b7b53bd5edf038b8 *tests/testthat/test-hierarchicalMetaAnalysis.R
76306a6d4ba7c100bca41b5fc071ce3d *tests/testthat/test-java.R
08eb920b217b538bab7575bbbcf0d069 *tests/testthat/test-llAproximations.R
f5e032086e00e69e717c8f44941a591b *tests/testthat/test-nonNormalMetaAnalysis.R
892524081a290305c68593f685400bc9 *tests/testthat/test-plots.R
dc01048bd9be95bed6b4dba7095bbe52 *tests/testthat/test-simpleBayesianModel.R
0f52cf07e92aa597ea3d304f9287af69 *tests/testthat/test_predictionInterval.R
1d5c35e6b0b9fe4ed833f78a146ef4f1 *vignettes/BayesianBiasCorrection.Rmd
4030aa1a520bdaee944069f24b7dca74 *vignettes/NonNormalEffectSynthesis.Rmd
b05913624a8135eec138cbb95823bedd *vignettes/VideoVignette.Rmd
24f00b11773e3def96a22a1cf3e05af9 *vignettes/randomFxPooled.rds
