6598c96a89c6a3f936c3d62dc27bc25c *DESCRIPTION
260ec9ae28177c8192a259ef18dd059f *NAMESPACE
86ca9dc45ec09f9e9fa7aab56f184e95 *NEWS.md
83dd2fc56f01970c0beac3a716986736 *R/breedtools_functions.R
16c9c743b968e2cd6a67eb771a56572b *R/calculate_Het.R
cdd1adf3d563ce9c4b1b7528093fb58d *R/calculate_MAF.R
80e5e065a9573f8817132aa62e648828 *R/check_ped.R
56b738885bf56d1f5962f424f0c8c2cc *R/dosage2vcf.R
816d40855909ed077396b83ae3aad5c3 *R/dosage_ratios.R
f0ba7aaf0bca1be5d9a18abad5745885 *R/filterMADC.R
4024e4c8d43daeb34cbee253300682e3 *R/filterVCF.R
158281fc58835926368acce3cb727861 *R/flip_dosage.R
07f9fad8c429bf4da276e79ffc4759f7 *R/get_countsMADC.R
1f0849eb80dbbb2a9d5c2dcad52692dc *R/imputation_concordance.R
0fac810de2212dc2d893645df3801367 *R/madc2gmat.R
74581220ced328d3826f33c5b904a144 *R/madc2vcf_all.R
049062be107dc5d214f28d7ed03cbc55 *R/madc2vcf_targets.R
4de9195fe86f83ac1fe5cec3741aa21a *R/merge_MADCs.R
be817282a7b05e81e7d7024976623935 *R/relationship_qc.R
f52e3e0d7fef956a27281961521a844c *R/thinSNP.R
c1f5142bff9886328dba0b713259f600 *R/updog2vcf.R
c26aa95013f1770f728ab4c3d3e5a5ee *R/utils.R
103768941a225a04520a980e2d2b5acd *README.md
db014c081afaaaf206278a08427f1442 *inst/CITATION
a05fb1c9c1e98a59a0862acc1445bb2b *inst/REFERENCES.bib
ee0cfbc65a96cb26be26ede4c3cc3f84 *inst/WORDLIST
ee8531053ef73fb10ce6d80ed5dc8051 *inst/check_ped_test.txt
46bc828bb3c569eca6806872c7469b0b *inst/example_MADC_FixedAlleleID.csv
8793cd4d2133b178ad43874882ee894e *inst/example_MADC_to_merge.csv
c9c090f3dc4012a24139caf4f16758e9 *inst/example_SNPs_DArTag-probe-design_f180bp.botloci
e091aa882d6d134120df53071e679c0b *inst/example_allele_db.fa
ed1a14b0bd716fde4c40ac560f4cf0d8 *inst/extdata/iris-multidog.rdata
93d72cf5e93c0181128a6da935312a09 *inst/imputation_ignore.txt
d58e845b53297b3f3d8558ba74e7cf75 *inst/imputation_reference.txt
7cc93ab7df76f6b87441c7bf3bf8d88d *inst/imputation_test.txt
ce2f5ed23a2d29dc8835cece545872dd *inst/iris_DArT_Allele_Dose_Report.csv
f85fdd252c0965239997da22d32866fd *inst/iris_DArT_Allele_Dose_Report_small.csv
5f12da6dc16896ed9bd4ed7b752c7f1a *inst/iris_DArT_Counts.csv
f23eba8871cae83d0ec048d7ff581fca *inst/iris_DArT_Counts_small.csv
e9e2234847c17227b2ab00f59da16716 *inst/iris_DArT_MADC.csv
3de0fe561a7b5ea55c0280a84b6f2dcb *inst/iris_DArT_VCF.vcf.gz
b025a0412314a7e60682fa7d504402cb *inst/ref_ids.txt
893559a1de43eac9a81d65c805281902 *inst/test_ref.txt
36c9a579a612509bbc7b0b54710e9887 *inst/test_test.txt
5a4d57f2b032fcf5a8f3d8feab977374 *man/allele_freq_poly.Rd
caa9c57db949379ec017a152e73022e1 *man/calculate_Het.Rd
52901c783906976a09dd2bd94ac668fe *man/calculate_MAF.Rd
900f66fa3fe32521fdd920b5d150ec2a *man/check_homozygous_trios.Rd
af11b1c1ec15d5df4000834ae3e4f8a9 *man/check_ped.Rd
39e769b56769c07001ba404d00d8bcd9 *man/check_replicates.Rd
53d4e8048dbd76c43688410601ea468b *man/dosage2vcf.Rd
5f600d4513a1d820669fcbac55a74ddb *man/dosage_ratios.Rd
e44a772c73fd82b346c157dd5bd95c3c *man/filterMADC.Rd
c6edbe9183cf1231cf5b0a154c76ed97 *man/filterVCF.Rd
bed98876a835a9d72efce41d2af78b96 *man/flip_dosage.Rd
31218525e9d810746f13280b9aeeb50c *man/get_countsMADC.Rd
fb14c2b5c35632f548469d48381defa9 *man/imputation_concordance.Rd
c7fe09e6737af201065c972bb480ee6f *man/madc2gmat.Rd
5a207f019e8de0c1c728f1f089f09683 *man/madc2vcf_all.Rd
6b9cf1228a73cfd7a40784885907a9d5 *man/madc2vcf_targets.Rd
618ff57705ed0c1be8ec5d9244467215 *man/merge_MADCs.Rd
6f3a3e2046c13b8eda23022e90ffbe75 *man/solve_composition_poly.Rd
f9e24ee16d2211868e508efe15e1740a *man/thinSNP.Rd
c4bd69ce00130f6418c1b006a4ab939a *man/updog2vcf.Rd
f706abb8f74854bcfdfbc2b013938dab *tests/testthat.R
d9ba5fffae48cc689c4864d20f2d0f68 *tests/testthat/test-breedtools_poly.R
6b47fb6f9c3364b8b025a7408c3512f0 *tests/testthat/test-calculate_Het.R
c35d00718650796cb29949bccf853412 *tests/testthat/test-calculate_MAF.R
985f7acaf5b066279bc99ae82643c589 *tests/testthat/test-check_ped.R
519bcbebaf5d3e357c8ad4a9292e03fb *tests/testthat/test-dosage2vcf.R
a4b9cc9e9bf5f635f47cd11554e125a9 *tests/testthat/test-dosage_ratios.R
a457fd1c913d54e8885e709c6fee4fd1 *tests/testthat/test-filterMADC.R
89d2ad9c25a0ba15e705871787fce13c *tests/testthat/test-filterVCF.R
29cf8a7f88f33420e262a14e4557180d *tests/testthat/test-flip_dosage.R
fed61a427e93cdacdb8c51da031458f2 *tests/testthat/test-get_countsMADC.R
e80107780744f457f36943a917fedf0d *tests/testthat/test-imputation_concordance.R
740709e6f46280830341c41cd9f8c1b0 *tests/testthat/test-madc2gmat.R
1bc1235814fbd9a97ed3d6b2f0dbaac7 *tests/testthat/test-madc2vcf_all.R
87b812cfcc97ab715d1ca13d7d5b5d8d *tests/testthat/test-madc2vcf_targets.R
bec7054ceaf2159ebe6f21b7abc6f12a *tests/testthat/test-merge_MADCs.R
78fe4631366ad5322fe5fc39d46aaf89 *tests/testthat/test-relationship_qc.R
a196ae2185a6d4aad539aa882962678e *tests/testthat/test-thinSNP.R
0cd7e9e0de57067d012af850006ab12f *tests/testthat/test-updog2vcf.R
