AdjustMatrix            Adjust the columns of the input matrix same as
                        in the reference matrix
CompareMethodsNodeOrdering
                        Comparison of inference accuracy using the same
                        data but with different node orderings.
CompareMethodsVStructure
                        Comparison of inference accuracy of different
                        methods on data with and without a v-structure
CutModules              Cut a numeric variable into intervals
EdgeOrientation         Perform edge orientation under the MRPC
                        algorithm
IdentifyAssociatedPCs   Identifyprincipal components (PCs) that are
                        significantly associated with eQTLs and genes
MRPC                    Infer a causal network using the MRPC algorithm
MRPCclass-class         Class of MRPC algorithm results
MRPCtruth               Graphs used as truth in simulation
ModiSkeleton            Infer a graph skeleton (undirected graph)
PlotDendrogram          Plot a dendrogram and display node groups in
                        colored modules
PlotGraphWithModules    Plot a graph with nodes in modules indicated by
                        colors
RecallPrecision         Calculate recall and precision for two graphs
RobustCor               Calculate robust correlation matrix
SeqFDR                  Sequential FDR
SimulateData            Simulate data under certain graphs
SimulateData1P          Simulate data for a node with one parent
SimulateData2P          Simulate data for a node with two parents
SimulateData3P          Simulate data for a node with three parents
SimulateDataNP          Simulate data for a node with no parent
aSHD                    Adjusted structural hamming distance (aSHD)
data_GEUVADIS           GEUVADIS data with 62 eQTL-gene sets
data_GEUVADIS_combined
                        Combined genotype and gene expression data from
                        62 eQTL-gene sets in 373 Europeans from
                        GEUVADIS
data_examples           Example data under simple and complex models
data_with_outliers      Example data with outliers
data_without_outliers   Example data without outliers
empty                   Check empty matrix
mpinv                   Calculate the inverse matrix
seqDiff                 Deviation between two graphs represented by two
                        sequences
simu_data_M0            Data for Model 0
simu_data_M1            Data for Model 1
simu_data_M2            Data for Model 2
simu_data_M3            Data for Model 3
simu_data_M4            Data for Model 4
simu_data_layered       Data for the layered model
simu_data_multiparent   Data for the multiple-parent model
simu_data_starshaped    Data for the star model
