# Comprehensive Batch Effect Diagnostics and Harmonization

## Documentation for package ‘ComBatFamQC’ version 1.0.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.biweight_midvar | Biweight Midvariance Calculation
adni | Harmonization Data
age_df | Age Trajectory Data
age_list_gen | Age Trend Estimates Generation
age_save | Export Brain ROI Age Trends
age_shiny | Lifespan Age Trends
age_table_gen | Generate Age Trend Summary Table
age_trend_plot | Generate Age Trend Plot
combat_harm | ComBatFamily Harmonization
combat_plot_gen | Generate Diagnostic Plots for Batch Effect Analysis
combat_table_gen | Generate Diagnostic Tables for Batch Effect Analysis
comfam | ComBat Family Harmonization
comfam_shiny | Batch Effect Interactive Visualization
covfam | CovBat Family Harmonization
customize_percentile | Generate Predicted Quantiles for Age Trends
cus_result_gen | Generate Customized Predicted Quantiles List
data_prep | Data Preparation
diag_save | Export Batch Effect Diagnosis Results
eb_check | EB Assumption Check
form_gen | ComBatFamily Model Formula Generations
getQuantileRefactored | Compute Quantile Functions for a Predictor in a GAMLSS Model
interaction_gen | Interaction Term Generation
model_gen | Model Generations
predict.comfam | Apply Harmonization to New Data
residual_gen | Post Harmonization Residual Generation
visual_prep | Batch Effect Diagnostic Visualization Preparation