dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building rmatrix using existing ./rmatrix_1.2-17.orig.tar.gz dpkg-source: info: building rmatrix in rmatrix_1.2-17-1~bustercran.0.debian.tar.xz dpkg-source: info: building rmatrix in rmatrix_1.2-17-1~bustercran.0.dsc I: Generating source changes file for original dsc dpkg-genchanges: warning: the current version (1.2-17-1~bustercran.0) is earlier than the previous one (1.2-17-1) dpkg-genchanges: info: including full source code in upload I: using fakeroot in build. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 29 08:30:23 CEST 2019 I: pbuilder-time-stamp: 1556519423 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-i386-base.tgz] I: copying local configuration I: Installing apt-lines I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Copying source file I: copying [../rmatrix_1.2-17-1~bustercran.0.dsc] I: copying [../rmatrix_1.2-17.orig.tar.gz] I: copying [../rmatrix_1.2-17-1~bustercran.0.debian.tar.xz] I: Extracting source dpkg-source: warning: extracting unsigned source package (rmatrix_1.2-17-1~bustercran.0.dsc) dpkg-source: info: extracting rmatrix in rmatrix-1.2-17 dpkg-source: info: unpacking rmatrix_1.2-17.orig.tar.gz dpkg-source: info: unpacking rmatrix_1.2-17-1~bustercran.0.debian.tar.xz I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 7.0.0), dh-r, r-base-dev (>= 3.6.0), r-cran-lattice (>= 0.12-11.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12140 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 7.0.0); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev (>= 3.6.0); however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lattice (>= 0.12-11.1); however: Package r-cran-lattice is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} lsb-base{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-lattice{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/89.0 MB of archives. After unpacking 257 MB will be used. Writing extended state information... debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12140 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../004-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../006-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. 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Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libreadline-dev:i386 (7.0-5) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libthai0:i386 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libfreetype6:i386 (2.9.1-3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-2) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libncurses5-dev:i386 (6.1+20181013-2) ... Setting up libcurl4:i386 (7.64.0-2) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libharfbuzz0b:i386 (2.3.1-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.2-2+b3) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.26) ... Creating config file /etc/papersize with new version Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up libpaper-utils (1.1.26) ... Setting up man-db (2.8.5-2) ... Building database of manual pages ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libxt6:i386 (1:1.1.5-1+b3) ... Setting up xauth (1:1.0.10-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libfontconfig1:i386 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:i386 (2.3.2-2) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:i386 (8.6.9-2) ... Setting up libpango-1.0-0:i386 (1.42.4-6) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-6) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-6) ... Setting up r-base-core (3.6.0-1~bustercran.0) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-38-1) ... Setting up r-base-dev (3.6.0-1~bustercran.0) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up dh-r (20190121) ... Processing triggers for libc-bin (2.28-8) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/134 kB of archives. After this operation, 369 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17707 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.23-1_i386.deb ... Unpacking libfakeroot:i386 (1.23-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.23-1_i386.deb ... Unpacking fakeroot (1.23-1) ... 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I: Copying back the cached apt archive contents I: Building the package I: Running cd /build/rmatrix-1.2-17/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -sa -rfakeroot dpkg-buildpackage: info: source package rmatrix dpkg-buildpackage: info: source version 1.2-17-1~bustercran.0 dpkg-buildpackage: info: source distribution buster-cran dpkg-buildpackage: info: source changed by Johannes Ranke dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building rmatrix using existing ./rmatrix_1.2-17.orig.tar.gz dpkg-source: info: building rmatrix in rmatrix_1.2-17-1~bustercran.0.debian.tar.xz dpkg-source: info: building rmatrix in rmatrix_1.2-17-1~bustercran.0.dsc debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: Matrix Version: 1.2-17 I: R package with Priority: recommended, installing in usr/lib/R/library I: Building using R version 3.6.0-1~bustercran.0 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Mon, 29 Apr 2019 08:30:21 +0200 mkdir -p /build/rmatrix-1.2-17/debian/r-cran-matrix/usr/lib/R/library R CMD INSTALL -l /build/rmatrix-1.2-17/debian/r-cran-matrix/usr/lib/R/library --clean . "--built-timestamp='Mon, 29 Apr 2019 08:30:21 +0200'" * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/build/rmatrix-1.2-17/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CHMfactor.c -o CHMfactor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Csparse.c -o Csparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TMatrix_as.c -o TMatrix_as.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Tsparse.c -o Tsparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Mutils.c -o Mutils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chm_common.c -o chm_common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cs.c -o cs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cs_utils.c -o cs_utils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dense.c -o dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgCMatrix.c -o dgCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgTMatrix.c -o dgTMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgeMatrix.c -o dgeMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dpoMatrix.c -o dpoMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dppMatrix.c -o dppMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dsCMatrix.c -o dsCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dsyMatrix.c -o dsyMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dspMatrix.c -o dspMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtCMatrix.c -o dtCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtTMatrix.c -o dtTMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtrMatrix.c -o dtrMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtpMatrix.c -o dtpMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c factorizations.c -o factorizations.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ldense.c -o ldense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgCMatrix.c -o lgCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sparseQR.c -o sparseQR.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abIndex.c -o abIndex.o make[2]: Entering directory '/build/rmatrix-1.2-17/src/CHOLMOD' ( cd Lib ; make clean ) make[3]: Entering directory '/build/rmatrix-1.2-17/src/CHOLMOD/Lib' make[3]: Leaving directory '/build/rmatrix-1.2-17/src/CHOLMOD/Lib' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/CHOLMOD' make[2]: Entering directory '/build/rmatrix-1.2-17/src/COLAMD' ( cd Source ; make clean ) make[3]: Entering directory '/build/rmatrix-1.2-17/src/COLAMD/Source' make[3]: Leaving directory '/build/rmatrix-1.2-17/src/COLAMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/COLAMD' make[2]: Entering directory '/build/rmatrix-1.2-17/src/AMD' ( cd Source ; make clean ) make[3]: Entering directory '/build/rmatrix-1.2-17/src/AMD/Source' make[3]: Leaving directory '/build/rmatrix-1.2-17/src/AMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/AMD' make[2]: Entering directory '/build/rmatrix-1.2-17/src/SuiteSparse_config' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/SuiteSparse_config' make[2]: Entering directory '/build/rmatrix-1.2-17/src/CHOLMOD' ( cd Lib ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile ) make[3]: Entering directory '/build/rmatrix-1.2-17/src/CHOLMOD/Lib' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_add.c -o cholmod_add.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_band.c -o cholmod_band.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_common.c -o cholmod_common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_error.c -o cholmod_error.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_version.c -o cholmod_version.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Check/cholmod_check.c -o cholmod_check.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Check/cholmod_read.c -o cholmod_read.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Check/cholmod_write.c -o cholmod_write.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/build/rmatrix-1.2-17/src/CHOLMOD/Lib' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/CHOLMOD' make[2]: Entering directory '/build/rmatrix-1.2-17/src/COLAMD' ( cd Source ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile lib ) make[3]: Entering directory '/build/rmatrix-1.2-17/src/COLAMD/Source' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colamd_global.c -o colamd_global.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colamd.c -o colamd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/build/rmatrix-1.2-17/src/COLAMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/COLAMD' make[2]: Entering directory '/build/rmatrix-1.2-17/src/AMD' ( cd Source ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile lib ) make[3]: Entering directory '/build/rmatrix-1.2-17/src/AMD/Source' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_global.c -o amd_i_global.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/build/rmatrix-1.2-17/src/AMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/AMD' make[2]: Entering directory '/build/rmatrix-1.2-17/src/SuiteSparse_config' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/build/rmatrix-1.2-17/src/SuiteSparse_config' gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/rmatrix-1.2-17/src' make[1]: Entering directory '/build/rmatrix-1.2-17/src' make[1]: Leaving directory '/build/rmatrix-1.2-17/src' installing to /build/rmatrix-1.2-17/debian/r-cran-matrix/usr/lib/R/library/00LOCK-rmatrix-1.2-17/00new/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes Cleaning up after installing the Matrix package make[1]: Entering directory '/build/rmatrix-1.2-17/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory '/build/rmatrix-1.2-17/src/CHOLMOD/Lib' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/CHOLMOD/Lib' make[1]: Leaving directory '/build/rmatrix-1.2-17/src/CHOLMOD' make[1]: Entering directory '/build/rmatrix-1.2-17/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory '/build/rmatrix-1.2-17/src/COLAMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/COLAMD/Source' make[1]: Leaving directory '/build/rmatrix-1.2-17/src/COLAMD' make[1]: Entering directory '/build/rmatrix-1.2-17/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory '/build/rmatrix-1.2-17/src/AMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-17/src/AMD/Source' make[1]: Leaving directory '/build/rmatrix-1.2-17/src/AMD' make[1]: Entering directory '/build/rmatrix-1.2-17/src/SuiteSparse_config' make[1]: Leaving directory '/build/rmatrix-1.2-17/src/SuiteSparse_config' ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Matrix) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.2.0) I: Using r-cran-expm for Suggests:expm I: Using r-cran-mass for Suggests:MASS I: Using r-cran-lattice for Imports:lattice dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/pl/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/pl/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/fr/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/ko/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/de/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/fr/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/de/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/en@quot/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/en@quot/LC_MESSAGES/R-Matrix.mo dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-matrix/usr/lib/R/library/Matrix/libs/Matrix.so was not linked against libquadmath.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-matrix/usr/lib/R/library/Matrix/libs/Matrix.so was not linked against libgfortran.so.5 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: package r-cran-matrix: substitution variable ${R:Suggests} unused, but is defined dpkg-gencontrol: warning: package r-cran-matrix: substitution variable ${R:Suggests} unused, but is defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-matrix' in '../r-cran-matrix_1.2-17-1~bustercran.0_i386.deb'. dpkg-deb: building package 'r-cran-matrix-dbgsym' in '../r-cran-matrix-dbgsym_1.2-17-1~bustercran.0_i386.deb'. dpkg-genbuildinfo dpkg-genchanges -sa >../rmatrix_1.2-17-1~bustercran.0_i386.changes dpkg-genchanges: warning: the current version (1.2-17-1~bustercran.0) is earlier than the previous one (1.2-17-1) dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload (original source is included) I: copying local configuration I: Copying back the cached apt archive contents I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env  I: removing directory /var/cache/pbuilder/buster-i386/build/6339 and its subdirectories I: Current time: Mon Apr 29 08:33:20 CEST 2019 I: pbuilder-time-stamp: 1556519600